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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctggtttttctctccgtttagatagtttcagcatccaaccttccgtctacatgttgtcaactattgtctcactatgtcttaaaagGTTGTCAACTGTAAGGATGAACTTGCACAGTGCTACCTTATGGATTGCATTATTCAAGTCTTTCCTGATGATTTTCACCTTCAAACTCTCGATGTATTAT

Basic information

species Arabidopsis thaliana
transcript AT3G51310.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51310.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 3'ss of exon 7
gtctggtttttctctccgtttagatagtttcagcatccaaccttccgtctacatGTTGTCAACTATTGTCTCACTATGTCTTAAAAGGTTGTCAACTGTAAGGATGAACTTGCACAGTGCTACCTTATGGATTGCATTATTCAAGTCTTTCCTGATGATTTTCACCTTCAAACTCTCGATGTATTAT
|||||    ||   |  |||  || |  ||    ||  ||   ||| |     |  ||  | ||   |    | ||| |  |   |||| || || |||||||||||||||||||| | |||||| ||||| ||||| || ||||||||||| || || |  ||  | || ||  | ||   ||| |
gtctg-caattagatttgtt--gacaaatt----ataaaatgatccatgattctactggaagctgaagaagaaatatat--tggcagGTGGTTAATTGTAAGGATGAACTTGCACAATTCTACCTGATGGACTGCATAATACAAGTCTTTCCAGACGAATACCATTTACAGACATTGGAAACATTGT

upper sequence: AT3G51310.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM5G825524_T01 (Zea mays), 3'ss of exon 7
gtctggtttttctctcc-gtttagatagtttcagcat-ccaaccttccgtctacatGTTGTCAACTATTGTCTCACTATGTCTTAAAAGGTTGTCAACTGTAAGGATGAACTTGCACAGTGCTACCTTATGGATTGCATTATTCAAGTCTTTCCTGATGATTTTCACCTTCAAACTCTCGATGTATTAT
    | ||    |||   || | |||  ||     ||   ||  |   |  |  || | |  ||||   || | |  |||| ||   |||| || || ||||||||||| |||||||||| |||||| ||||| ||||| || ||||||||||| ||||| |  ||  | |||||  | ||   |||||
----gtttgcagtctgaagtattgatgattatgatatattaaattattgattgtat-tgg--aacttaagtatta--atgtattggcagGTGGTTAATTGTAAGGATGACCTTGCACAGTTCTACCTGATGGACTGCATAATCCAAGTCTTTCCAGATGAATACCATTTACAAACATTGGAAACATTAT

upper sequence: AT3G51310.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GRMZM5G844195_T02 (Zea mays), 3'ss of exon 8
gtctggtttttctctccgtttagatagtttcagcatccaaccttccgtctacatGTTGTCAACTATTGTCTCACTATGTCTTAAAAGGTTGTCAACTGTAAGGATGAACTTGCACAGTGCTACCTTATGGATTGCATTATTCAAGTCTTTCCTGATGATTTTCACCTTCAAACTCTCGATGTATTAT
       ||| |  || |      |  | | |      |   | || |   ||| |||  ||||   || | |  |||  ||   |||| || || ||||||||||| |||||||| | |||||| ||||| ||||| || ||||||||||| || || |  ||  | |||||  | ||    ||||
------gtttgcagtctgaagtattgatgttaatgattatgataccttgatcatattgg-aacttaagtatta--atgcattggcagGTGGTTAATTGTAAGGATGACCTTGCACAATTCTACCTGATGGACTGCATAATCCAAGTCTTTCCAGACGAATACCATTTACAAACATTGGAAACGTTAT

upper sequence: AT3G51310.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------------------gtctggtttttctctccgtttagatagtttca--gcatccaaccttccgtctacatG----TTGTCAACTATTG---------TCTCACTATGTCTTAAAAGGTTGTCAACTGTAAGGATGAACTTGCACAGTGCTACCTTATGGATTGCATTATTCAAGTCTTTCCTGATGATTTTCACCTTCAAACTCTCGATGTATTAT
                                                    | | |||||  |||    || |  | ||| |  || |   |  |  | | | ||||     | | |  || ||         |  || |     || | |||||||||| ||||| |||||  |||| || |  ||  | ||||||||||| |||||||||||||||||||| |  ||| | |||||||| ||   |||||
gtctgatctatttagttgtctctcaacagtttttttttttttttttggtcattttcgttttcttcttttatttgtcattttgaaggcgtgatatgtggcttttgcatgacaactataacataatggagcctacatggcattcgtctttgatagGTTGTCAATTGTAAAGATGAGATTGCCCAATTTTATTTGATGGATTGCATAATTCAAGTCTTTCCTGATGAGTACCACTTGCAAACTCTTGAGACATTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatccaaccttccgtctacatgttgtcaactattgtctcactatgtcttaaaagGTTGTCAACTGTAAGGATGAACTTGCACAGTGCTACCTTATGGATTGCATTATTCAAGTCTTTCCTGATGATTTTCACCTTCAAACTCTCGATGTATTAT
                                   gtctcac  putative branch site (score: 3)
                                              tcttaaaa  TA-rich tract