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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttattttcctaacatgtactcaattaatacttttagtgttttggtcacaagtttcactaagtatcatcccatcattgcagCTCAACGGCAAATTGGAGAGACAGCTTTAAATGAAGTTAGTTCCCGCTCTCATCAGATTCTGAGATTG

Basic information

species Arabidopsis thaliana
transcript AT3G51150.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164026927|gb|ES109183.1|ES109183
EST:     TTATCAATCTGTATAG                         CTCAACGGCAAATTGGAGAGACAGCTTTAAATGAAGTTAGTTCCCGCTCTC
genomic: TTATCAATCTGTATAGgtacttattt ... atcattgcagCTCAACGGCAAATTGGAGAGACAGCTTTAAATGAAGTTAGTTCCCGCTCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatacttttagtgttttggtcacaagtttcactaagtatcatcccatcattgcagCTCAACGGCAAATTGGAGAGACAGCTTTAAATGAAGTTAGTTCCCGCTCTCATCAGATTCTGAGATTG
 aattaat  putative branch site (score: 3)
                                         tcccatc  putative PPT
     ttttagt  TA-rich tract