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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttcttagttgtatgaggtaatcccctggaaatctcttatcagttcacagattcaacttctctctgtgtttgtgttattcttgtagCTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTT

Basic information

species Arabidopsis thaliana
transcript AT3G50240.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50240.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA17G18540.1 (Glycine max), 3'ss of exon 3
------------gtaaacttcttagttgtatgaggtaatcccctggaaatctcttatcagttcacagattcaact-tctctctgtgtttgtgttattcttgtagCTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTT
             |||| || |   || ||| |  |  |  ||   |      | |  | || |||   |   |  ||      || ||   || | |    ||||||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||| ||||| || || || ||||| 
tgttatataatgataaatttat--attttataatattttttccctaatcaaagtaaaaaatttacatgcttttcaatcaaaaaatggttaccttttcccc--agCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGTAATATTCAAAATAAGCCTGTA

upper sequence: AT3G50240.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA05G15750.1 (Glycine max), 3'ss of exon 7
-----gtaaacttcttagttgtatgaggtaatcccctgga---aatctcttatcagttcacagattcaacttc-tctctgtgtttgtgttattcttgtagCTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTT
     ||  |  ||| |  |  || | | | |    |  |   ||||       | ||   | || |   |   || |    |   |    ||     ||||||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||| ||||| || || || ||||| 
gtattgtctatatctaatatagataatgaattatttttaacctaatcaaagtaaattttttacatgcttttcaatcacaaaatggttaccctttcctcagCTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTG

upper sequence: AT3G50240.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv07s0031g00130.t01 (Vitis vinifera), 3'ss of exon 7
---------gtaaacttcttagttgtatgaggtaatcccctggaaatctcttatcagttcacagattcaacttctctctgtgtttgtgttattcttgtagCTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTT
           | | || | | ||| ||| |    |    | | ||  |   ||   | |     |      |   ||     |  |||| | |||  ||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| ||||||||||| || ||||||
tataatgcttgacaattttgatttgaatgtgcccctttgattggaaatttaaattcttccgtgcttctcttattaatcccaaatgctgttctccttccagCTTGCATCAGTCCTGCTGATATCAATGCTGAGGAAACTCTTAATACTCTCAAATATGCTAATCGCGCTCGTAATATCCAGAATAAGCCTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctcttatcagttcacagattcaacttctctctgtgtttgtgttattcttgtagCTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTT
                                           ttattctt  CT-rich tract
                                           ttattctt  TA-rich tract