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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtagataactcaagcttttaaacctccatctatcggggtcatatgttattcgaggttgtctgttttatttagaattggattacaaaagactcacgattaaacttcttctgtgtacagGAGAAAGCTTGTGAGCTTGTTAGGTCGATTGGAGACAATGTTATCCTTGAAAAAGTTGCATCAGAAGGACTTTCCTTTGCGGAAAAGCCGAGAAAGTCTA

Basic information

species Arabidopsis thaliana
transcript AT3G48900.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057448|gb|DR353205.1|DR353205
EST:     CGCTTTTGCTTGGCAGTGACTACTCTCAGGGAGTTCGTGGTCTTCGACAG                         GAGAAAGCTTGTGAGCTTGTTAGGTCGATTGGAGACAATGTTATCCTTGAA
genomic: CGCTTTTGCTTGGCAGTGACTACTCTCAGGGAGTTCGTGGTCTTCGACAGgtgtgtagat ... ctgtgtacagGAGAAAGCTTGTGAGCTTGTTAGGTCGATTGGAGACAATGTTATCCTTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatttagaattggattacaaaagactcacgattaaacttcttctgtgtacagGAGAAAGCTTGTGAGCTTGTTAGGTCGATTGGAGACAATGTTATCCTTGAAAAAGTTGCATCAGAAGGACTTTCCTTTGCGGAAAAGCCGAGAAAGTCTA
                         gactcac  putative branch site (score: 2)
                                       cttcttctgt  putative PPT
     tttagaatt  TA-rich tract