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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttctaattctcctttaatagacattggtttccagagtttcctattgttttatcaaacacatatagctaatttgtaccatctgagaaggaataagccttagactcaatcaaatttttgttgggaatctggaaacatttttccaaaaatctctaaccgtttctgcgctgttttagGAATGTGTCTTACTGCTGGGACATTAGCTGCGATAGTTGGCACAGTTGGAGCTGGTTTCTTTGTAGAACTATTGGGCTCCTTCCAGGGATTCATCCTTCT

Basic information

species Arabidopsis thaliana
transcript AT3G46980.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G46980.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv06s0004g06040.t01 (Vitis vinifera), 3'ss of exon 7
gtatgctttctaattctcctttaatagacattggtttccagagtttcctattgttttatcaaacacatatagctaatttgtaccatctgagaaggaataagccttagactcaatcaaatttttgttgggaatctggaaacatttttccaaaaatctctaaccgtttctgcgctgttttagGAATGTGTCTTACTGCTGGGACATTAGCTGCGATAGTTGGCACAGTTGGAGCTGGTTTCTTTGTAGAACTATTGGGCTCCTTCCAGGGATTCATCCTTCT
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-----------------------------------------------------------------------cttagtatatgatggctgttcttattt---ccagaaccctactgaaaccatcagacaatgactagtaa----tttccaagttgctaaatttgtattcgtgctga--cagGATTGTCAAATACGGCTGGAACATTTGCTGCCATTGTAGGAACAATTGGAGCTGGTTTCTTTGTTGAACTTGTGGGTTCTTTCCAAGGATTTCTGTTACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggaatctggaaacatttttccaaaaatctctaaccgtttctgcgctgttttagGAATGTGTCTTACTGCTGGGACATTAGCTGCGATAGTTGGCACAGTTGGAGCTGGTTTCTTTGTAGAACTATTGGGCTCCTTCCAGGGATTCATCCTTCT
                             ctctaac  putative branch site (score: 2)
                                              ctgtttt  putative PPT
               atttttccaaaaat  TA-rich tract