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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaccaagcaacactagagactctagtagttctgcagttaacaactttgctctatcatttctacatcctgttaattgaacttgattatgtatcttaaagGATCCAAAGTGGCAAATTGGGACTGTGTACACGCCAGCAGACGCTGTGGCTCAGGCGCTAAAGACCATTCCTCTTAGCGAAACTCGAGTTCTTTCCAGGA

Basic information

species Arabidopsis thaliana
transcript AT3G43540.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124717621|gb|EH809023.1|EH809023
EST:     ACTTGAAAAGGTTCGGCTGAACGGAAACCATCTTACACCTTGCATAACAG                         GATCCAAAGTGGCAAATTGGGACTGT
genomic: ACTTGAAAAGGTTCGGCTGAACGGAAACCATCTTACACCTTGCATA-CAGgtaataacca ... tatcttaaagGATCCAAAGTGGCAAATTGGGACTGT
EST: gi|125207931|gb|EL222885.1|EL222885
EST:     CACTTGAAAAGGTTCGGCTGAACGGAAACCATCTTACACCTTGCATACAG                         GATCCAAAGTGGCAAATTGGGACTGTGTACACGCCAGCAGACG
genomic: CACTTGAAAAGGTTCGGCTGAACGGAAACCATCTTACACCTTGCATACAGgtaataacca ... tatcttaaagGATCCAAAGTGGCAAATTGGGACTGTGTACACGCCAGCAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgctctatcatttctacatcctgttaattgaacttgattatgtatcttaaagGATCCAAAGTGGCAAATTGGGACTGTGTACACGCCAGCAGACGCTGTGGCTCAGGCGCTAAAGACCATTCCTCTTAGCGAAACTCGAGTTCTTTCCAGGA
                                       attatgtatcttaaa  TA-rich tract