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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagatcaatccttacttcttctgccaatacatcatcatcttgtgatccttttcctttaaattttgtattaaactttcttaaatctgtatgatcagTGTACCACGTTGGGCCGCAAGGATGGACGAAACTCTCTGGAGACGACGTTGGCGAGCTACATTACCATTATTACCCCGTGGCTCCAATCACCGCGGAACA

Basic information

species Arabidopsis thaliana
transcript AT3G26340.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083116|gb|DR378875.1|DR378875
EST:     CATCTACCATGCTACATTCCGTGATGGAGCTAGTGGTGGAGTTGCTAG-S                         TGTACCACGTTGGGCCGCAAGGATGGACGAAACTCTCTGGAGACGACGTTG
genomic: CATCTACCATGCTACATTCCGTGATGGAGCTAGTGGTGGAGTTGCTAGCGgtaaagatca ... gtatgatcagTGTACCACGTTGGGCCGCAAGGATGGACGAAACTCTCTGGAGACGACGTTG
EST: gi|86076876|gb|DR372633.1|DR372633
EST:     CATCTACCATGCTACATTCCGTGATGGAGCTAGTGGTGGAGTTGCTAG-S                         TGTACCACGTTGGGCCGCAAGGATGGACGAAACTCTCTGGAGACGACGTTG
genomic: CATCTACCATGCTACATTCCGTGATGGAGCTAGTGGTGGAGTTGCTAGCGgtaaagatca ... gtatgatcagTGTACCACGTTGGGCCGCAAGGATGGACGAAACTCTCTGGAGACGACGTTG
EST: gi|125298589|gb|EL312674.1|EL312674
EST:     TGGAGCTAGTGGTGGAGTTGCTAGCG                         TGTACCACGTTGGGCCGCAAGGATGGACGAAACTCTCTGGAGACGACGTTG
genomic: TGGAGCTAGTGGTGGAGTTGCTAGCGgtaaagatca ... gtatgatcagTGTACCACGTTGGGCCGCAAGGATGGACGAAACTCTCTGGAGACGACGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgatccttttcctttaaattttgtattaaactttcttaaatctgtatgatcagTGTACCACGTTGGGCCGCAAGGATGGACGAAACTCTCTGGAGACGACGTTGGCGAGCTACATTACCATTATTACCCCGTGGCTCCAATCACCGCGGAACA
        ttttcctttaaatttt  TA-rich tract