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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactacacagttcctagtatttttctgataactttcctttggatagttggatgtgctggattttccatggcttacttagtcatggtaactcatttactggatgcttaaacagAGCAAGTTGTCGATGGACTTGATAGAGCTGTCATGAAGATGAAAAAGGGTGAAGTGGCATTGGTGACCATAGACCCTGAGTATGCCTTTGGTTCTAATGA

Basic information

species Arabidopsis thaliana
transcript AT3G25230.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25230.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA08G46090.2 (Glycine max), 3'ss of exon 7
gtaactacacagttcctagtatttttctgataactttcctttggatagt----tggatgtgctggattttccatggcttacttagtcatggtaactcatttactgg-atgcttaaacagAGCAAGTTGTCGATGGACTTGATAGAGCTGTCATGAAGATGAAAAAGGGTGAAGTGGCATTGGTGACCATAGACCCTGAGTATGCCTTTGGTTCTAATGA
                              ||||||    |  | ||||    |   |   ||| ||     ||   ||  || |||| |  || | |||   ||   |||| ||||||| |||||||| ||||||||||||||||||||  |||  ||||| |||||||| || ||| || ||||||| |  ||||| ||||| ||||||||    ||
-----------------------------gtaacttgaaatctgctagtgtcctcattccactgcatccaatatatattttttggtcaagtaaagtgattgtttgatgtgctgaaacagAACAAGTTGTTGATGGACTTGATAGAGCTGTATTGACTATGAAGAAGGGTGAGGTTGCACTGTTGACCATTGCACCTGAATATGCTTTTGGTTCATCAGA

upper sequence: AT3G25230.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA18G32830.1 (Glycine max), 3'ss of exon 7
gtaactacacagttcctagtatttttctgataactttcctttggatagttggatgtgctggattttccatggcttacttagtcatggtaactcatttactggatgct-taaacagAGCAAGTTGTCGATGGACTTGATAGAGCTGTCATGAAGATGAAAAAGGGTGAAGTGGCATTGGTGACCATAGACCCTGAGTATGCCTTTGGTTCTAATGA-
 |||||  | |  | ||||| |  |        | ||||| || ||               | | |  |||  ||  || ||||    || |||||   | || |   | |||||| |||||||| ||||||||||||||||||||  |||  ||||| |||||||| || || ||| ||||||| |  ||||| ||||| || ||| |    || 
-taacttgaaatctgctagtgtcct--------cattcctctgcatcc-------------actatttatgtttt-tttggtcaaataaattcattgttttgaggtgatgaacagaACAAGTTGTTGATGGACTTGATAGAGCTGTATTGACTATGAAGAAGGGTGAGGTTGCGTTGTTGACCATTGCACCTGATTATGCTTTCGGTACATCAGAG

upper sequence: AT3G25230.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv00s0769g00010.t01 (Vitis vinifera), 3'ss of exon 7
gtaactacacagttcctagtatttttctgataactttcctttggatagttggatgtgctggattttccatggcttacttagtcatggtaactcatttactggatgcttaaacagAGCAAGTTGTCGATGGACTTGATAGAGCTGTCATGAAGATGAAAAAGGGTGAAGTGGCATTGGTGACCATAGACCCTGAGTATGCCTTTGGTTCTAATGA
                  ||| || |     |  ||| |     || ||   | ||  |    |||  |    |   ||   | ||   | | | ||  |   |   |  |||||||||||| ||||||| |||||||||||||| ||||  ||||| |||||||| || ||  |  | || ||  |  | || ||||| ||||| ||   |||
------------------gtaattataatgcagtttttcaacccatggt---aggtttttaggtttgtactcttattttgaccttgaggaatgaatttttccctttctggacagAGCAAGTTATCGATGGGCTTGATAGAGCTGTAATGACAATGAAGAAGGGTGAGGTAGCCCTTCTCACTATTCATTCAGATTATGCATTTGGCTCATCTGA

upper sequence: AT3G25230.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv00s0958g00020.t01 (Vitis vinifera), 3'ss of exon 3
gtaactacacagttcctagtatttttctgataactttcctttggatagttggatgtgctggattttccatggcttact-tagtcatggtaactcatttactggatgcttaaacagAGCAAGTTGTCGATGGACTTGATAGAGCTGTCATGAAGATGAAAAAGGGTGAAGTGGCATTGGTGACCATAGACCCTGAGTATGCCTTTGGTTCTAATGA
                  ||| || |     |  ||| |     || || || | |  | | |||    |  |||| | |   | ||   | | | ||  |   |   |  |||||||||||| ||||||| |||||||||||||| ||||  ||||| |||||||| || ||  |  | || ||  |  | || ||||| ||||| ||   |||
------------------gtaattataatgcagtttttcaacccatggtaggtttt--taggtttgtact--cttattctgaccttgaggaatgaatttttccctttctggacagAGCAAGTTATCGATGGGCTTGATAGAGCTGTAATGACAATGAAGAAGGGTGAGGTAGCCCTTCTCACTATTCATTCAGATTATGCATTTGGCTCATCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattttccatggcttacttagtcatggtaactcatttactggatgcttaaacagAGCAAGTTGTCGATGGACTTGATAGAGCTGTCATGAAGATGAAAAAGGGTGAAGTGGCATTGGTGACCATAGACCCTGAGTATGCCTTTGGTTCTAATGA
                         tggtaac  putative branch site (score: 2)
              ttactta  TA-rich tract