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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatatgcattagtctcttaaggtttcgacaaagaaacttcttttctgccttttatattgaaataccaaaccctttgtgcttgtatgttaccaatcttgatttctaagaaagactactgttagttgctgtttacattaatgaaattgaaatcgttgtcttgtgtctgagaaatttggacacaatgtttgcgtacagTTGCAGAATGGGCTAATGAAGCAGTCCAAGGCATTGAAAAAGGGGCACCTTTTTCTCTTTACCTAACACACAAGTACTTCTCCAAAGTTGCTTGTGCCAA

Basic information

species Arabidopsis thaliana
transcript AT3G24360.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164059307|gb|ES009350.1|ES009350
EST:     GTGAGGCTTCAG                         TTGCAGAATGGGCTAATGAAGCAGTCCAAGGCATTGAAAAAGGGGCACCTT
genomic: GTGAGGCTTCAGgtatgatatg ... ttgcgtacagTTGCAGAATGGGCTAATGAAGCAGTCCAAGGCATTGAAAAAGGGGCACCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattgaaatcgttgtcttgtgtctgagaaatttggacacaatgtttgcgtacagTTGCAGAATGGGCTAATGAAGCAGTCCAAGGCATTGAAAAAGGGGCACCTTTTTCTCTTTACCTAACACACAAGTACTTCTCCAAAGTTGCTTGTGCCAA
                          agaaattt  TA-rich tract