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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgactgatcctcttatcctccactacattctacatacactaagtaaagataaatatcagatataacgcaagattcattacatcaaagaaatagataatcttttatgtcaaaacaagccaaattatcttgatgaatgtatatcattggaaaacgtgtttgatgtgtgatggttcatggcatttgcagTTCAAAAGGAGTCTTATCACGGTCTTGAAAGCTAATCAAACACACAAGACAGTTCCCAGATTCACACTTCATCGTCGAGTTCATGAGCCATCGTCAATTC

Basic information

species Arabidopsis thaliana
transcript AT3G22425.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19799738|gb|AU231028.1|AU231028
EST:     GTACGACAAGCGACAGATACTGATCCACGCCGTGGTGGGACAATACCAAG                         TTCAAAAGGAGTCTTATCACGGTCTTGAAAGCTAATCAAACACACAAGACA
genomic: CTACGACAAGCAACAGAGACTGATCCACGCCGTGGTGGGACAATACCAAGgtttgactga ... gcatttgcagTTCAAAAGGAGTCTTATCACGGTCTTGAAAGCTAATCAAACACACAAGACA
EST: gi|86080767|gb|DR376524.1|DR376524
EST:     CTACGACAAGCAACAGAGACTGAT-CACGCCGTGGTGGGACAATACCAAG                         TTCAAAAGGAGTCTTATCACGGTCTTGAAAGCTAATCAAACACACAAGACA
genomic: CTACGACAAGCAACAGAGACTGATCCACGCCGTGGTGGGACAATACCAAGgtttgactga ... gcatttgcagTTCAAAAGGAGTCTTATCACGGTCTTGAAAGCTAATCAAACACACAAGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatgtatatcattggaaaacgtgtttgatgtgtgatggttcatggcatttgcagTTCAAAAGGAGTCTTATCACGGTCTTGAAAGCTAATCAAACACACAAGACAGTTCCCAGATTCACACTTCATCGTCGAGTTCATGAGCCATCGTCAATTC
                       gtttgat  putative branch site (score: 5)
     tatatcatt  TA-rich tract