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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggaatcgttactttgtttgtttatctatacatatcgacatgacatccccctagttggtacttcgtttttggctaatttggagttgaatttaacacaaaatggttatgccaatatctacggttgctactttgtttcctacttgttctttgcatcgtgatttttctttcttccaatcttcagGAGGAGAAAACAAAGGGAAAAGTTCCTGAATACCTACCCAACGCTGTGATGTTCGGGCTTTCTCCGTCCGAATATGTTCTCAGGGCCATCTCAAATGTGA

Basic information

species Arabidopsis thaliana
transcript AT3G21540.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G21540.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv08s0007g04690.t01 (Vitis vinifera), 3'ss of exon 7
gtgggaatcgttactttgtttgtttatctatacatatcgacatgacatccccctagttggtacttcgtttttggctaatttggagttgaatttaacacaaaatggttatgccaatatctacggttgctactttgtttcctacttgttctttgcatcgtgatttttctttcttccaatcttcagGAGGAGAAAACAAAGGGAAAAGTTCCTGAATACCTACCCAACGCTGTGATGTTCGGGCTTTCTCCGTCCGAATATGTTCTCAGGGCCATCTCAAATGTGA
                                                                     || ||  ||| |    || |||||||          |||    |   ||   ||||| | |  ||| ||    || |  |||  ||  |    ||| |       ||| ||||||||||||||||||||||||||||| |||| | || ||| ||   | | ||| | || || ||||| || || | ||||||  | ||  ||||||||||  
--------------------------------------------------------------------cttggggaaatctcctttttaatttaa--------atttacaggagattcataggttgatgccatgtatctacattatgatttatatgattggctttgt-------aattttcagGAGGAGAAAACAAAGGGAAAAGTTGCTGACTTCCAACCAAATATTTTAATGCTTGGTCTCTCTCCATCAGACTTTGTTCTTCGTGCACTCTCAAATGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttgtttcctacttgttctttgcatcgtgatttttctttcttccaatcttcagGAGGAGAAAACAAAGGGAAAAGTTCCTGAATACCTACCCAACGCTGTGATGTTCGGGCTTTCTCCGTCCGAATATGTTCTCAGGGCCATCTCAAATGTGA
                                tttttctttcttccaa  CT-rich tract
                               atttttcttt  TA-rich tract