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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtattgttattagacaataaattcttatatttgtcgaacaaagctttgtctcatctcattcatggcttcttacttgggaatcttgaactgtgttagGTACCGTCTCTTCACAGACCATGTGAGAAGAACGCGGTCAACGATATGGATCAAAGACGGGAAAGGTAAGTTCCAACGTCGTAGCGGGTAAAAGAGTAAA

Basic information

species Arabidopsis thaliana
transcript AT3G21480.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86082934|gb|DR378693.1|DR378693
EST:     TGAGTATGAGAG                         GTACCGTCTCTTCGCAGACCATGTGAGAAGAACGCGGTCAACGATATGGAT
genomic: TGAGTATGAGAGgtgggtattg ... actgtgttagGTACCGTCTCTTCACAGACCATGTGAGAAGAACGCGGTCAACGATATGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctttgtctcatctcattcatggcttcttacttgggaatcttgaactgtgttagGTACCGTCTCTTCACAGACCATGTGAGAAGAACGCGGTCAACGATATGGATCAAAGACGGGAAAGGTAAGTTCCAACGTCGTAGCGGGTAAAAGAGTAAA
                         ttcttac  putative branch site (score: 2)