Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcatacgtagatattcccatgcttagtcttttaagaagcatctttacttgtcgttgaatttttttttgtttttcttacttattatatgtatagGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTTTTA

Basic information

species Arabidopsis thaliana
transcript AT3G20840.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20840.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 6
gtttgcatacgtagatattcccatgcttagtcttttaagaagcatctttacttgtcgttgaatttttttttgtttttcttacttattata---tgtatagGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTTTTA
                             || |   |   |  || |  |  | | ||    | | | ||||  |  |||||  |  ||    ||   |||||||| ||||||||||||||||| |||||||| ||  |||| |||||||||||||||||||| |||||||||||||
-----------------------------gtatggaattgaatatatagatct-ttgtctcttctctatttggctcacttacccaagatgctttgagcagGCATCATCAACATGGAAGATGGCAGGCAAGGATTGGAAGAGTTGCCGGAAACAAAGACCTCTATTTGGGAACTTTTA

upper sequence: AT3G20840.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: EFJ17692 (Selaginella moellendorffii), 3'ss of exon 4
gtttgcatacgtagatattcccatgcttagtcttttaagaagcatctttacttgtcgttgaatttttttttgtttttcttacttattatatgtatagGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTTTTA
                                                | ||  |  |  | |  | | || |||  |||   | || | |    ||||||||||| || ||||||||||||||  ||||||| ||||| || || || ||||| || ||| | |||||||| |
--------------------------------------------gtaatgctcatgatcaattcatatattttttcacttcggtctttt-ttcccagGCATCACCAGCAGGGAAGATGGCAAGCTCGGATCGGACGAGTTGCGGGGAATAAAGATCTGTACCTCGGAACTTTCA

upper sequence: AT3G20840.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: EFJ16224 (Selaginella moellendorffii), 3'ss of exon 4
gtttgcatacgtagatattcccatgcttagtcttttaagaagcatctttacttgtcgttgaatttttttttgtttttcttacttattatatgtatagGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTTTTA
                                                | ||  |  |  | |  | | || |||  |||   | || | |    ||||||||||| || ||||||||||||||  ||||||| ||||| ||||| || ||||| || ||| | |||||||| |
--------------------------------------------gtaatgctcatgatcaattcatatattttttcacttcggtctttt-ttcccagGCATCACCAGCAAGGAAGATGGCAAGCTCGGATCGGACGAGTTGCCGGGAATAAAGATCTGTACCTCGGAACTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctttacttgtcgttgaatttttttttgtttttcttacttattatatgtatagGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTTTTA
                                 ttcttac  putative branch site (score: 2)
                    tttttttttgtttttc  CT-rich tract
               ttgaatttttttttgt  TA-rich tract