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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgctgcgtcatattttctgattgacgtacgaagtacctttgttagtattgatcagtgctgtgttttctcacctgttttgtttatatttttcttgatcagTTATCGCTGTTATTGAAGGGAACAGTTGTGGCCCCTCCAGATAAATTTGGTAATGTTACTGCTCTGTTCTCTGCTAGTCAACTTCTTTGGCATAAACTTT

Basic information

species Arabidopsis thaliana
transcript AT3G19720.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164022484|gb|ES120043.1|ES120043
EST:     CAAAACTCAAAGAGAGAGGCAGGACTTTCCATGATCTCTTCTTAACCAAG                         TTATCGCTGTTATTGAAGGGAACAGTTGTGGCCCCTCCAGATAAA
genomic: CAAAACTCAAAGAGAGAGGCAGGACTTTCCATGATCTCTTCTTAACCAAGgtaactgtag ... tcttgatcagTTATCGCTGTTATTGAAGGGAACAGTTGTGGCCCCTCCAGATAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattgatcagtgctgtgttttctcacctgttttgtttatatttttcttgatcagTTATCGCTGTTATTGAAGGGAACAGTTGTGGCCCCTCCAGATAAATTTGGTAATGTTACTGCTCTGTTCTCTGCTAGTCAACTTCTTTGGCATAAACTTT
                    ttctcac  putative branch site (score: 2)
                                   tttatatttttctt  putative PPT
                              ttttgtttatattttt  TA-rich tract