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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgttaaaactttttaacaaataaaaactcatattttaccatcaagtcttggtgagcttatagaatatcttttgttttcgggtcatgcttgaagGTTTATTCACCCATTAGTATATGGAGAGTATCCAAAGACAATGCAGAACATTGTGAAAGAGAGGCTTCCAAAGTTCACGGAGAAAGAAGTGAAAATGGTG

Basic information

species Arabidopsis thaliana
transcript AT3G18080.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125011729|gb|EL083998.1|EL083998
EST:     GAGACTTCCATATCGGATG                         GTTTATTCACCCATTAGTATATGGAGAGTATCCAAAGACAATGCAGAACAT
genomic: GAGACTTCCATATCGGATGgtaaatgtta ... atgcttgaagGTTTATTCACCCATTAGTATATGGAGAGTATCCAAAGACAATGCAGAACAT
EST: gi|164130186|gb|ES092108.1|ES092108
EST:     CTTGCAGCTCAAAGAGCAAGAGACTTCCATATCGGATG                         GTTTATTCACCCATTGGTATA
genomic: CTTGCAGCTCAAAGAGCAAGAGACTTCCATATCGGATGgtaaatgtta ... atgcttgaagGTTTATTCACCCATTAGTATA
EST: gi|125270906|gb|EL284991.1|EL284991
EST:     AAAGCAGATAATCTTGCAGCTCAAAGAGCAAGAGACTTCCATATCGGATG                         GTTTATTCACCCATTA
genomic: AAAGCAGATAATCTTGCAGCTCAAAGAGCAAGAGACTTCCATATCGGATGgtaaatgtta ... atgcttgaagGTTTATTCACCCATTA
EST: gi|124740168|gb|EH831330.1|EH831330
EST:     AAAGCAGATAATCTTGCAGCTCAAAGAGCAAGAGACTTCCATATCGGATG                         GTTTATTACACCCATTAGTATATGGAGAGTATCCAAA
genomic: AAAGCAGATAATCTTGCAGCTCAAAGAGCAAGAGACTTCCATATCGGATGgtaaatgtta ... atgcttgaagGTTTATT-CACCCATTAGTATATGGAGAGTATCCAAA
EST: gi|125006488|gb|EL078757.1|EL078757
EST:     AAAGCAGATAATCTTGCAGCTCAAAGAGCAAGAGACTTCCATATCGGATG                         GTTTATTCACCCAT
genomic: AAAGCAGATAATCTTGCAGCTCAAAGAGCAAGAGACTTCCATATCGGATGgtaaatgtta ... atgcttgaagGTTTATTCACCCAT
EST: gi|116477432|gb|EG520024.1|EG520024
EST:     AAAGCAGATAATCTTGCAGCTCAAAGAGCAAGAGACTTCCATATCGGATG                         GTTTATTCACCCATTAGTATATGGAGAGTATCCAAAGACAATGCAGAACAT
genomic: AAAGCAGATAATCTTGCAGCTCAAAGAGCAAGAGACTTCCATATCGGATGgtaaatgtta ... atgcttgaagGTTTATTCACCCATTAGTATATGGAGAGTATCCAAAGACAATGCAGAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcaagtcttggtgagcttatagaatatcttttgttttcgggtcatgcttgaagGTTTATTCACCCATTAGTATATGGAGAGTATCCAAAGACAATGCAGAACATTGTGAAAGAGAGGCTTCCAAAGTTCACGGAGAAAGAAGTGAAAATGGTG
                  ttatagaatatctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatgttaaaactttttaacaaataaaaactcatattttaccatcaagtcttggtgagcttatagaatatcttttgttttcgggtcatgcttgaagGTTTATTCACCCATTAGTATATGGAGAGTATCCAAAGACAATGCAGAACATTGTGAAAGAGAGGCTTCCAAAGTTCACGGAGAAAGAAGTGAAAATGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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