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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtattgaaaaaccaaaaagaaagaaaactttactatatagtgcggctcacagctattactcaagcaatttgtaatggttgttgaatctgatttcaaactaatgtaatgggtttgtgtttctaatacctcagGAGAGTAACAATTTGGAGTACCTAATACCGAAAAAGTCATCGCTAAGGCGTAGACTACCAATGGGTGACCAAGGCTTCATAGACTTTGTGGCATACTTGC

Basic information

species Arabidopsis thaliana
transcript AT3G17750.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G17750.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA08G06160.1 (Glycine max), 3'ss of exon 8
gtgcgtattgaaaaaccaaaaagaaagaaaactttactatatagtgcggctcacagctattactcaagcaatttgtaatggttgttgaatc-tgatttcaaactaatgt-aatgggtttgt-gtttctaatacctcagGAGAGTAACAATTTGGAGTACCTAATACCGAAAAAGTCATCGCTAAGGCGTAGACTACCAATGGGTGACCAAGGCTTCATAGACTTTGTGGCATACTTGC
                               ||| ||| |  | |    || ||   | ||     |  |||||||  | |   ||| ||  |    |  ||  | ||| | |   ||| | |||| | |  |  ||||| |  |||   || || ||| | || ||||||||| |||| || |||| |||| | |||||||| |||||||||||||| |||||||| ||  ||||||
-------------------------------cttgacttttaatt----cttacca-tgttgtatta--aatttgtgtttgcctttgcattgtttacttgaatgattgtcagtaaatttattgtttattaatctacagGAAACCAACCGGTTAGAATACTTGATTCCGAAAAAGACATCCCTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTTGCTCACTTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgttgaatctgatttcaaactaatgtaatgggtttgtgtttctaatacctcagGAGAGTAACAATTTGGAGTACCTAATACCGAAAAAGTCATCGCTAAGGCGTAGACTACCAATGGGTGACCAAGGCTTCATAGACTTTGTGGCATACTTGC
                                         ttctaat  putative branch site (score: 2)
                      taatgtaat  TA-rich tract