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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcagattattaattctatatgggttttccaaaatgatccacattccaataattattatgatagaagaaaattaatctgatccacttgccttggtaaacagGTAACTTCAAGGAAAGACCAAGAACAGTATTGGGCAGACTCAAAAAAACCATACAGTTACATTTCTGTCTCTGAATTCTCCAAACGATTCAGAACCTTCC

Basic information

species Arabidopsis thaliana
transcript AT3G16340.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16340.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA08G21540.2 (Glycine max), 3'ss of exon 8
gcagattattaattctatatgggttttccaaaatgat--ccacattccaataattattatgatagaagaaaattaatctgatccac----ttgccttgg-----taaacagGTAACTTCAAGGAAAGACCAAGAACAGTATTGGGCAGACTCAAAAAAACCATACAGTTACATTTCTGTCTCTGAATTCTCCAAACGATTCAGAACCTTCC
           |    ||   || | ||    |||||      |||  || ||  |  |  | |||  ||    |||  ||   ||    || | |||      | ||||||| || |||||||| |||||||| |||||||||||||||  ||| |  |||||| ||||  || | ||  |||||||  | ||    ||||  |  ||||
-----------aaaacatgcaggctctctctgatgatgatgttatttaaaaaaaaaaaaaaaaagagtaagggcaattagaattacaatgttactttgaaatattgaacagGTTACCTCAAGGAAGGACCAAGAGCAGTATTGGGCAGACAAAAACATGCCATACCGTTATGTTACAGTGACTGAATTTGCAAACAAGTTCAAGAGATTCC

upper sequence: AT3G16340.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA13G43140.1 (Glycine max), 3'ss of exon 8
---gcagattattaattctat-atgggtt-ttccaaaatgatccacattccaataattattatgatagaagaaaattaatctgatccacttgccttggtaaacagGTAACTTCAAGGAAAGACCAAGAACAGTATTGGGCAGACTCAAAAAAACCATACAGTTACATTTCTGTCTCTGAATTCTCCAAACGATTCAGAACCTTCC
      || |||||||| | | ||   ||  | || || |    |  || ||| ||  | |   | |||||||  | |||   |     |    |||    | |||| |||||||||||||| |||||||| ||||||||| |   ||    | ||||| ||||  |  | ||    || ||  | ||  ||||||     || |
taacgggagtattaattttgtgataaattactgcataagggcatatttttcaaaaa--aatcaaaaagaagaatgtaaatggcagttgttaattttgt---atagGTTACTTCAAGGAAAGATCAAGAACAATATTGGGCAAATAGAAGCTTATCATACCGTTATGTCACAGTGAGCGAGTTTGCAAATAGATTCAAGCAATTTC

upper sequence: AT3G16340.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA15G02220.1 (Glycine max), 3'ss of exon 8
gcagattattaattctatatgggttttccaaaatgatccacattccaataattattatgatagaagaaaattaatctgatccacttgcct-tggtaaacagGTAACTTCAAGGAAAGACCAAGAACAGTATTGGGCAGACTCAAAAAAACCATACAGTTACATTTCTGTCTCTGAATTCTCCAAACGATTCAGAACCTTCC
   || | |||||| | |      |||| | |      || |||  |||  | |  | |  | ||   |     |      || |||    |  |  | |||| |||||||||||||| |||||||| ||||||||| |   ||    ||||||| | || ||| | ||    || ||  | ||  ||||||     || |
-tggagtgttaattttgtgataaatttctacataaggacatattttaattttcaaaaagccaaaaaggagaatgtaaatgacagttgttaattttgtatagGTTACTTCAAGGAAAGATCAAGAACAATATTGGGCAAATAGAAGCTTACCATACCGGTATATTACAGTGAGCGAGTTTGCAAATAGATTCAAGCAATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caataattattatgatagaagaaaattaatctgatccacttgccttggtaaacagGTAACTTCAAGGAAAGACCAAGAACAGTATTGGGCAGACTCAAAAAAACCATACAGTTACATTTCTGTCTCTGAATTCTCCAAACGATTCAGAACCTTCC
                                      cttgcctt  CT-rich tract
     attattatgatagaag  TA-rich tract