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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctcttttctccatggatgtgacacaatgtcttggcattgttttcacctaaaaactcaaaaacatatattttgtttttctcttcgaaacagGCAGATAGTGCACTTAGCGCGCTCAATTGCAGCGGAATGGTCGTTGGATCACAACCGATAAG

Basic information

species Arabidopsis thaliana
transcript AT3G14450.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125287983|gb|EL302068.1|EL302068
EST:     TTGGCGATCAATTGCATTCAACTCGCATAGCTTTTGTTGAATTTGCTCTG                         GCAGATAGTGCACTTAGCGCGCT
genomic: TTGGCGATCAATTGCATTCAACTCGCATAGCTTTTGTTGAATTTGCTCTGgtgagctctt ... ttcgaaacagGCAGATAGTGCACTTAGCGCGCT
EST: gi|124829590|gb|EH914181.1|EH914181
EST:     TTGGCGATCAATTGCATTCAACTCGCATAGCTTTTGT-GAATTTGCTCTG                         GCAGATAGTGCACTTAGCGCGCT
genomic: TTGGCGATCAATTGCATTCAACTCGCATAGCTTTTGTTGAATTTGCTCTGgtgagctctt ... ttcgaaacagGCAGATAGTGCACTTAGCGCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttttcacctaaaaactcaaaaacatatattttgtttttctcttcgaaacagGCAGATAGTGCACTTAGCGCGCTCAATTGCAGCGGAATGGTCGTTGGATCACAACCGATAAG
         acctaaa  putative branch site (score: 3)
                              tattttgtttttctct  putative PPT
            taaaaactcaaaaaca  TA-rich tract