Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaacacattttcttgttccaggagaatcaagatcccgagagaaattgtcatgaatttgaacttattttcttcaatgtgttgtttgtttttgcagGTTGAAGAAGATGGGTCGATCACTAAGATAAGGCATGCTGAGACATTCGATGACCATTTGCGTTTCTTTGAAGGTCTATGAACTCTTAGATTTACTCATC

Basic information

species Arabidopsis thaliana
transcript AT3G14390.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164200381|gb|ES165006.1|ES165006
EST:     AATCTCAAGATGCGTCCTCCGGAATACT-G                         GTTGAAGAAGATGGGTCGATCACTAAGATAAGGCATGCTGAGACATTCGAT
genomic: AATCTCAAGATGCGTCCTCCGGAATACTGGgtaccaacac ... gtttttgcagGTTGAAGAAGATGGGTCGATCACTAAGATAAGGCATGCTGAGACATTCGAT
EST: gi|116455317|gb|EG497909.1|EG497909
EST:     TGAGCATGGCTTCCACTTACAATCTCAAGATGCGTCCTCCGGAATACTGG                         GTTGAAGAAGATGGGTCGATCACTAAGATAAGGCATGCTGAGACATTCGAT
genomic: TGAGCATGGCTTCCACTTACAATCTCAAGATGCGTCCTCCGGAATACTGGgtaccaacac ... gtttttgcagGTTGAAGAAGATGGGTCGATCACTAAGATAAGGCATGCTGAGACATTCGAT
EST: gi|164051391|gb|ES167174.1|ES167174
EST:     TGAGCATGGCTTCCACTTACAATCTCAAGATGCGTCCTCCGGAATACTGG                         GTTGAAGAAGATGGGTCGATCACTAAGATAAGGCA
genomic: TGAGCATGGCTTCCACTTACAATCTCAAGATGCGTCCTCCGGAATACTGGgtaccaacac ... gtttttgcagGTTGAAGAAGATGGGTCGATCACTAAGATAAGGCA
EST: gi|86075276|gb|DR371033.1|DR371033
EST:     TGAGCATGGCTTCCACTTACAATCTCAAGATGCGTCCTCCGGAATACTGG                         GTTGAAGAAGATGGGTCGATCACTAAGATAAGGCATGCTGAGACATTCGAT
genomic: TGAGCATGGCTTCCACTTACAATCTCAAGATGCGTCCTCCGGAATACTGGgtaccaacac ... gtttttgcagGTTGAAGAAGATGGGTCGATCACTAAGATAAGGCATGCTGAGACATTCGAT
EST: gi|164123012|gb|EL981414.1|EL981414
EST:     GATGCGTCCTCCGGAATACTGG                         GTTGAAGAAGATGGGTCGATCACTAAGATAAGGCATGCTGAGACATTCGAT
genomic: GATGCGTCCTCCGGAATACTGGgtaccaacac ... gtttttgcagGTTGAAGAAGATGGGTCGATCACTAAGATAAGGCATGCTGAGACATTCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaattgtcatgaatttgaacttattttcttcaatgtgttgtttgtttttgcagGTTGAAGAAGATGGGTCGATCACTAAGATAAGGCATGCTGAGACATTCGATGACCATTTGCGTTTCTTTGAAGGTCTATGAACTCTTAGATTTACTCATC
                                          tttgttttt  CT-rich tract
             aatttgaacttatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccaacacattttcttgttccaggagaatcaagatcccgagagaaattgtcatgaatttgaacttattttcttcaatgtgttgtttgtttttgcagGTTGAAGAAGATGGGTCGATCACTAAGATAAGGCATGCTGAGACATTCGATGACCATTTGCGTTTCTTTGAAGGTCTATGAACTCTTAGATTTACTCATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG