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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactcctataagtaggtctctatgtattgataaataaaaactccctgtaagtgaaccagttaaagttaatacttagttactaacattgtgctttttcaacttcacagTTATCTTCAGAACAATCAGTTCTCAGGCACCATTGATATTCTAGCCACCCTTCCTCTCGAAAATCT

Basic information

species Arabidopsis thaliana
transcript AT3G14350.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116468521|gb|EG511113.1|EG511113
EST:     ATAGGGTCTCTCCCAAACACTTGTAGCTCTCTTACGAGTGCAAAATCAAT                         TTATCTTCAGAACAA
genomic: ATAGGGTCTCTCCCAAACACTTGTAGCTCTCTTACGAGTGCAAAATCAATgtaagactcc ... aacttcacagTTATCTTCAGAACAA
EST: gi|116468522|gb|EG511114.1|EG511114
EST:     ATAGGGTCTCTCCCAAACACTTGTAGCTCTCTTACGAGTGCAAAATCAAT                         TTATCTTCAGAACAATCAGTTCTCAGACACCATTGATATTCTAGCCACCCT
genomic: ATAGGGTCTCTCCCAAACACTTGTAGCTCTCTTACGAGTGCAAAATCAATgtaagactcc ... aacttcacagTTATCTTCAGAACAATCAGTTCTCAGGCACCATTGATATTCTAGCCACCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaccagttaaagttaatacttagttactaacattgtgctttttcaacttcacagTTATCTTCAGAACAATCAGTTCTCAGGCACCATTGATATTCTAGCCACCCTTCCTCTCGAAAATCT
                         tactaac  putative branch site (score: 0)
                                      ctttttca  putative PPT
       ttaaagttaatactta  TA-rich tract