Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttttcttgcgtccactcctccttgggccaaatatgattaattgttaaaaattgtcttgtttaaaagtctgttttttcctaacaagttgtgcccgtgcagATTTGGGAACATGGTTGCTTGCTTCCGGTACGCTACTATAGATGTTCATTCGGTCTACCTTCCACCATCAATTCTTAGTTTCAACTACGAGAATCAGGAT

Basic information

species Arabidopsis thaliana
transcript AT3G14270.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14270.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 8
gtacttttttcttgcgtccactcctccttgggccaaatatgattaattgttaaaaattgtcttgtttaaaagtctgttttttcctaacaagttgtgcccgtgcagATTTGGGAACATGGTTGCTTGCTTCCGGTACGCTACTATAGATGTTCATTCGGTCTACCTTCCACCATCAATTCTTAGTTTCAACTACGAGAATCAGGAT
  |   || | |  | ||   |||||  |    |||   ||||     |   |   |     ||| |     ||   || |  ||  |   || | |    ||||||||||||| |||||||||||||| || || ||  | || ||||||||||| ||||||||||| ||  |||  |||   |||||||| |||||||| || 
-cagaattatttcccatctgttcctctgtta--caatcttgatgtcacggccatcctcccactgtctgcc--tcaccttctcactggctgtttttacatccgcagATTTGGGAAGATGGTTGCTTGCTTTCGCTATGCATCGATTGATGTTCATTCAGTCTACCTTCCCCCCGCAAAACTTGAATTCAACTATGAGAATCAAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaaattgtcttgtttaaaagtctgttttttcctaacaagttgtgcccgtgcagATTTGGGAACATGGTTGCTTGCTTCCGGTACGCTACTATAGATGTTCATTCGGTCTACCTTCCACCATCAATTCTTAGTTTCAACTACGAGAATCAGGAT
                               tcctaac  putative branch site (score: 1)
           ttgtttaaaa  TA-rich tract