Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaattccatagacttctcacttaagccgtttcccttggattattcatcaagctcaattaattttcttctcagGGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAG

Basic information

species Arabidopsis thaliana
transcript AT3G13070.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13070.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA02G46780.1 (Glycine max), 3'ss of exon 7
---gtaaaaaaattccatagacttctcactta-agccgtttcccttggattattcatcaagctcaatta--attttcttctcagGGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAG
    |   || ||| |  ||  |||  | ||| ||   |||  |||     ||     ||  | ||| |  |     |||  ||||| |||||||||||||| ||| ||||||||||| |||| || |||||||| |||||||| || ||||||||||| |||
gtattttgaagatttc-caggtttcaaatttacagtgattttacttttccaatgtgctaa-ttgaatcatgacacgtttcctagGGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTGGATTATGTTCAAAAG

upper sequence: AT3G13070.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA14G01920.1 (Glycine max), 3'ss of exon 7
--gtaaaaaaattccatagacttctcacttaagccgtttcccttggattattcatcaagctcaatta--attttcttctcagGGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAG
   |   || ||| | | || |||  | |||    |  |    |     | |   | | ||  || |  |     |||  || || |||||||||||||| ||| ||||||||||| |||| || || ||||| |||||||| || ||||||||||| |||
gtatttgaagatttcct-gatttcaaatttacaatgactttacttttccaatgtgctaactagatcatgaagcgtttcctagAGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCTTATGCAATGGATCTGCTGGATTATGTTCAAAAG

upper sequence: AT3G13070.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 7
--gtaaaaaaattcca--tagacttctcacttaagccgtttcccttggattattcatcaagc--tcaattaattttcttctcagGGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAG
   | | ||| || ||  | |  |    |  | |     |     |  |     |||| |    |  || ||  | |||| |||||| |||||||||||||||||| ||||||| ||||| ||  |||||||||| |||||||| || |||||| ||||||||
gtatgataaagttacagctggtttggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttc-cagGGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124821675|gb|EH906541.1|EH906541
EST:     GCCAGTCTAGTTGATTTCCATAGTATGTGGGTGACCCATCAGTACTCAAG                         GGTGCCTGTTTT
genomic: GCCAGTCTAGTTGATTTCCATAGTATGTGGGTGACCCATCAGTACTCAAGgtaaaaaaat ... ttcttctcagGGTGCCTGTTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttaagccgtttcccttggattattcatcaagctcaattaattttcttctcagGGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAG
                                       ttaattttcttctc  CT-rich tract
                                   tcaattaattttctt  TA-rich tract