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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgactacctgtggagctctccctaatctttcattcattttagtcttgctgtacattattacttgaaagatgcttcgtttaatataacgcaattgaagtataggctaactccttttcatgttatcagGCTATTTTGATCATACATGTTCCTTGTCGGTTTAGAAATTTCAGCATCCAAGATTCTTCTCGCTTTG

Basic information

species Arabidopsis thaliana
transcript AT3G12280.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124985668|gb|EL058244.1|EL058244
EST:     GACATGCTCAAATGGCGTAGTTTCTATATTG                         GCTATTTTGATCATACATGTTCCTTGTCGGTTTAGAAATTTCAGCATCCAA
genomic: GACATGCTCAAATGGCGTAGTTTCTATATTGgttagtgact ... atgttatcagGCTATTTTGATCATACATGTTCCTTGTCGGTTTAGAAATTTCAGCATCCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcgtttaatataacgcaattgaagtataggctaactccttttcatgttatcagGCTATTTTGATCATACATGTTCCTTGTCGGTTTAGAAATTTCAGCATCCAAGATTCTTCTCGCTTTG
                              ggctaac  putative branch site (score: 2)
                                    ctccttttcatgtt  CT-rich tract
     tttaatataa  TA-rich tract