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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattcatctatttccgtcttaactatttcggttaattaaagcacgaacaccattactgcatgtagaagcttgataaactatcgccaccaatttatttttgttgcgatattgttactttcctcagtatgcagctttgaaaagaccaaccctcttatcctttaacaatgaacagGTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGCTTAATTTTCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G11945.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124819588|gb|EH904454.1|EH904454
EST:     CTTTCTACATGCCTCAG                         GTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC
genomic: CTTTCTACATGCCTCAGgtgaattcat ... caatgaacagGTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC
EST: gi|125203131|gb|EL218085.1|EL218085
EST:     CTTTCTACATGCCTCAG                         GTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC
genomic: CTTTCTACATGCCTCAGgtgaattcat ... caatgaacagGTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC
EST: gi|124911352|gb|EH985432.1|EH985432
EST:     TAGCTTTCTACATGCCTCAG                         GTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC
genomic: TAGCTTTCTACATGCCTCAGgtgaattcat ... caatgaacagGTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctcagtatgcagctttgaaaagaccaaccctcttatcctttaacaatgaacagGTTTTTAGAGGTAGCTTGATGATTCCTGCACATGTGATCTTGGCTTCAGGCTTAATTTTCCAG
                                       ctttaac  putative branch site (score: 3)
                                        tttaacaat  TA-rich tract