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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaattgaaagtaaagactgtttgtgtttttggtgttcatgctagtttccctgactcttgctccactgttatgcagACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAGTCTGGACCGTTGCCATTACATTTACTGGAAATTCTAGCGAAAAGTATAA

Basic information

species Arabidopsis thaliana
transcript AT3G11170.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125045728|gb|EL117997.1|EL117997
EST:     TTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCA                         ACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
genomic: TTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAgtaagtaaat ... tgttatgcagACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
EST: gi|164145479|gb|ES046419.1|ES046419
EST:     TCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCA                         ACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTAATAAG
genomic: TCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAgtaagtaaat ... tgttatgcagACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
EST: gi|124943624|gb|EL019793.1|EL019793
EST:     CCCGTCAGATCCCACATTATCATCTAGTAGAAGCA                         ACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
genomic: CCCG-CAGATCCCACATTATCATCTAGTAGAAGCAgtaagtaaat ... tgttatgcagACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
EST: gi|124715211|gb|EH806613.1|EH806613
EST:     TCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCA                         ACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
genomic: TCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAgtaagtaaat ... tgttatgcagACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
EST: gi|116378423|gb|EG421015.1|EG421015
EST:     TGATACATCATCTTTTCCCGCAGATCCCACATTATCATTTAGTAGAAGCA                         ACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
genomic: TGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAgtaagtaaat ... tgttatgcagACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
EST: gi|125244816|gb|EL258901.1|EL258901
EST:     CCCGCAGATCCCACATTATCATCTAGTAGAAGCA                         ACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
genomic: CCCGCAGATCCCACATTATCATCTAGTAGAAGCAgtaagtaaat ... tgttatgcagACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
EST: gi|124908370|gb|EH982450.1|EH982450
EST:     TCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCA                         ACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
genomic: TCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAgtaagtaaat ... tgttatgcagACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAG
EST: gi|124977458|gb|EL050779.1|EL050779
EST:     TGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCA                         ACAGAAGCAGCTAAACCAG
genomic: TGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAgtaagtaaat ... tgttatgcagACAGAAGCAGCTAAACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtttttggtgttcatgctagtttccctgactcttgctccactgttatgcagACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAGTCTGGACCGTTGCCATTACATTTACTGGAAATTCTAGCGAAAAGTATAA
                           ccctgac  putative branch site (score: 3)
                                       ctccact  putative PPT
     ttttt  TA-rich tract