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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatgatttaccctaccggcgaaaaacagagctcttgtcaattaccataattagtgattaatgattattcgttttgattgtagACTGATGGGTTCTTCAAAACAAGTGTGCCTGATGTATACGCACTTGGAGATGTAGCCACATTCCCAATGAAAATGTATGGCGGGACGAGGCGTGTTGAAC

Basic information

species Arabidopsis thaliana
transcript AT3G09940.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09940.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 3'ss of exon 8
----------gtttatgatttaccc-taccggcgaaaaaca-gagctcttgt----caattaccataattagtgattaatgattattcgttttgattgtagACTGATGGGTTCTTCAAAACAAGTGTGCCTGATGTATACGCACTTGGAGATGTAGCCACATTCCCAATGAAAATGTATGGCGGGACGAGGCGTGTTGAAC
            | |||| |||  | || |       |    ||  |||||     || ||   | || | | | | | | | | |    ||||| || |||||||||  ||||||||||||||||| ||||||||||| ||  | |||||||| || || |||||| ||||| ||||    |  |  ||  | |||||||
gtcgtcccaaaataatgagttatacatatctatagctagtttgatgtcttggatagcatttttgaaaacttgaggtca-tcactctgatctttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGATGTTGCTACTTTCCCACTGAAATTGTACAATGAAATTAGAAGAGTTGAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagctcttgtcaattaccataattagtgattaatgattattcgttttgattgtagACTGATGGGTTCTTCAAAACAAGTGTGCCTGATGTATACGCACTTGGAGATGTAGCCACATTCCCAATGAAAATGTATGGCGGGACGAGGCGTGTTGAAC
                                       ttcgtttt  CT-rich tract
                  ataattagtgattaat  TA-rich tract