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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttttcactgcaacctcatttcctgttatattttttccattcaaagctgaagaaatgtgcatttatggtctctacagATCTGGTCGATATGAAGTGGATGGATATGTCTATAACGCCTCTGAGGAGCCTAAGATACTCATGACTGGCAAATGGAACGAGTCCATGAGTTATCAGCCG

Basic information

species Arabidopsis thaliana
transcript AT3G09300.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164117816|gb|ES126203.1|ES126203
EST:     GGCTGGTTCGG                         ATCTGGTCGATATGAAGTGGATGGATATGTCTATAACGCCTCTGAGGAGCC
genomic: GGCTGGTTCGGgtaagttttt ... gtctctacagATCTGGTCGATATGAAGTGGATGGATATGTCTATAACGCCTCTGAGGAGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttatattttttccattcaaagctgaagaaatgtgcatttatggtctctacagATCTGGTCGATATGAAGTGGATGGATATGTCTATAACGCCTCTGAGGAGCCTAAGATACTCATGACTGGCAAATGGAACGAGTCCATGAGTTATCAGCCG
                                              tctctac  CT-rich tract
     atattttttccatt  TA-rich tract