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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacgagtgtatcttagaacttatactataatatttttcttgttcaactattttattccctggtacctttttccagGCAGAAACTGCATGGGCTTTCACTGTGCTCGGATACTTGGCCAAGTTTATTCTTGGAATCGTAGG

Basic information

species Arabidopsis thaliana
transcript AT3G08930.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125217743|gb|EL231826.1|EL231826
EST:     ATGTATCCTCAAGGAGAGCAG                         GCAGAAACTGCATGGGCTTTCACTGTGCTCGGATACTTGGCCAAGTTTTAT
genomic: ATGTATCCTCAAGGAGAGCAGgtaagacgag ... ctttttccagGCAGAAACTGCATGGGCTTTCACTGTGCTCGGATACTTGGCCAAGTTT-AT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatactataatatttttcttgttcaactattttattccctggtacctttttccagGCAGAAACTGCATGGGCTTTCACTGTGCTCGGATACTTGGCCAAGTTTATTCTTGGAATCGTAGG
                                          tacctttttcc  CT-rich tract
     tataatatttttcttg  TA-rich tract