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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctagcactactaaaacagttcgtgttatgaccattgcaactgagcatagattaagcatgaggggttgtaataccagaagtggttggtgtatcttatatgaaatttggacatgatgtgtgtgtgcagGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGACAGGATATCGAGACACCTGGGCTTGCAAATGTAGCTGCGACAGTGATGA

Basic information

species Arabidopsis thaliana
transcript AT3G08590.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124705950|gb|EH797352.1|EH797352
EST:     TCGATAAGGAAGGGAACCTTCAGATTCTTACCTCTCACACCCTTAAACCA                         GTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTCAGGTTTAGA
genomic: TCGATAAGGAAGGGAACCTTCAGATTCTTACCTCTCACACCCTTAAACCAgtaagttcta ... gtgtgtgcagGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA
EST: gi|125016810|gb|EL089079.1|EL089079
EST:     CTTACCTCTCACACCCTTAAACCA                         GTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA
genomic: CTTACCTCTCACACCCTTAAACCAgtaagttcta ... gtgtgtgcagGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA
EST: gi|124857480|gb|EH941917.1|EH941917
EST:     CTCTCACACCCTTAAACCA                         GTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA
genomic: CTCTCACACCCTTAAACCAgtaagttcta ... gtgtgtgcagGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA
EST: gi|86084815|gb|DR380574.1|DR380574
EST:     TCGATAAGGAAGGGAACCTTCAGATTCTTACCTCTCACACCCTTAAACCA                         GTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA
genomic: TCGATAAGGAAGGGAACCTTCAGATTCTTACCTCTCACACCCTTAAACCAgtaagttcta ... gtgtgtgcagGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accagaagtggttggtgtatcttatatgaaatttggacatgatgtgtgtgtgcagGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGACAGGATATCGAGACACCTGGGCTTGCAAATGTAGCTGCGACAGTGATGA
                 tatcttatatgaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttctagcactactaaaacagttcgtgttatgaccattgcaactgagcatagattaagcatgaggggttgtaataccagaagtggttggtgtatcttatatgaaatttggacatgatgtgtgtgtgcagGTGCCAATTGCCATAGGAGGTCCTGGCTTGTCAGCAGGAGTTAGGTTTAGACAGGATATCGAGACACCTGGGCTTGCAAATGTAGCTGCGACAGTGATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC