1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgcattatcatcgctcttttcttgtagccttaatctctataaaaaatattcctcattcctgttaaggtttgatcgtttacaccacttgatagGTGGGGAAGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTCGTTCCAAATCTGGCTATCAAAGAGGCAGTGGCAGCATATCTAGAAAAAC
species | Arabidopsis thaliana |
transcript | AT3G07370.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAACATCTCAAGAAG GTGGGGAAGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTCEST: gi|124812183|gb|EH897049.1|EH897049
genomic: CAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAACATCTCAAGAAGgtttgcatta ... cacttgatagGTGGGGAAGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTC
EST: CAATCCTTGAACATCTCAAGAAG GTGGGGAAGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTC
genomic: CAATCCTTGAACATCTCAAGAAGgtttgcatta ... cacttgatagGTGGGGAAGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTC
tataaaaaatattcctcattcctgttaaggtttgatcgtttacaccacttgatagGTGGGGAAGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTCGTTCCAAATCTGGCTATCAAAGAGGCAGTGGCAGCATATCTAGAAAAAC
gtttgat putative branch site (score: 5)
aaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcattatcatcgctcttttcttgtagccttaatctctataaaaaatattcctcattcctgttaaggtttgatcgtttacaccacttgatagGTGGGGAAGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTCGTTCCAAATCTGGCTATCAAAGAGGCAGTGGCAGCATATCTAGAAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG