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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggatctttttttgttcctcgtaaacttgaagcgtaaaagcatttttgaaaaccagtttcttaactcatcattgtctctaatatgaatggttatgcagGTAAAATCCCATACTATACAATGCCGCCAAAGAGGGACCAGGGTGGACATGCAGAGTCAAAGATTGTGACTGAGCTGGCCAAGGATTTCAACATCGATGA

Basic information

species Arabidopsis thaliana
transcript AT3G07050.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163998858|gb|ES157416.1|ES157416
EST:     TGTGGATATTGATGCTGCTGCCAGAATTGTTTTGCATGACTGGAATGAAG                         GTAAAATCCCATACTATACAATGCCGC
genomic: TGTGGATATTGATGCTGCTGCCAGAATTGTTTTGCATGACTGGAATGAAGgtgcggatct ... ggttatgcagGTAAAATCCCATACTATACAATGCCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgaaaaccagtttcttaactcatcattgtctctaatatgaatggttatgcagGTAAAATCCCATACTATACAATGCCGCCAAAGAGGGACCAGGGTGGACATGCAGAGTCAAAGATTGTGACTGAGCTGGCCAAGGATTTCAACATCGATGA
                                   taatatgaat  TA-rich tract