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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttgtagtttcatcaccatagagttaagatataacgaatcctagatatcataagtgacgttgttcttatgttgtttgttgaaagCTTTTCAAGCTGGAAGATGTGGCGATGGGGATATGGATTCAACAATTCAACCAGACGATAAAAAGAGTGAAGTACATCAATGACAAAAGATTTCATAACA

Basic information

species Arabidopsis thaliana
transcript AT3G06440.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164057972|gb|EL994968.1|EL994968
EST:     TGTGGTGAAGGGTCACCGTCAAAGAGATCTTGGA                         CTTTTCAAGCTGGAAGATGTGGCGATGG
genomic: TGTGGTGAAGGGTCACCGTCAAAGAGATCTTGGAgtgagttttg ... ttgttgaaagCTTTTCAAGCTGGAAGATGTGGCGATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataacgaatcctagatatcataagtgacgttgttcttatgttgtttgttgaaagCTTTTCAAGCTGGAAGATGTGGCGATGGGGATATGGATTCAACAATTCAACCAGACGATAAAAAGAGTGAAGTACATCAATGACAAAAGATTTCATAACA
 atataac  putative branch site (score: 3)
               atatcataa  TA-rich tract