1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttggattcctctttcttcacttgaaagtttcttactttacatttaaagagcacaagaaacttaagaaatcttcttcacaatttacagAGTGTGAAGAACAATCTTCCACGTATATGCACAAACCATCTTGATCCAACCTCG
species | Arabidopsis thaliana |
transcript | AT3G05910.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGGCGGCCGCACAATCAGGAACTTATACAATGGTGTCGTAGAATTGCAG AGTGTGAAGAACAATCTTCCACGTATATGCACAAACCATCTTGATCCAACCEST: gi|125213344|gb|EL228183.1|EL228183
genomic: CAGGCGGCCGCACAATCAGGAACTTATACAATGGTGTCGTAGAATTGCAGgttggattcc ... caatttacagAGTGTGAAGAACAATCTTCCACGTATATGCACAAACCATCTTGATCCAACC
EST: CAGGCGGCCGCACAATCAGGAACTTATACAATGGTGTCGTAGAATTGCAG AGTGTGAAGAACAATCTTCCACGTEST: gi|124721957|gb|EH813359.1|EH813359
genomic: CAGGCGGCCGCACAATCAGGAACTTATACAATGGTGTCGTAGAATTGCAGgttggattcc ... caatttacagAGTGTGAAGAACAATCTTCCACGT
EST: ATACAATGGTGTCGTAGAATTGCAG AGTGTGAAGAACAATCTTCCACGTATATGCACAAACCATCTTGATCCAACC
genomic: ATACAATGGTGTCGTAGAATTGCAGgttggattcc ... caatttacagAGTGTGAAGAACAATCTTCCACGTATATGCACAAACCATCTTGATCCAACC
tactttacatttaaagagcacaagaaacttaagaaatcttcttcacaatttacagAGTGTGAAGAACAATCTTCCACGTATATGCACAAACCATCTTGATCCAACCTCG
ttcttac putative branch site (score: 2)
tcttcttcac putative PPT
tacatttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggattcctctttcttcacttgaaagtttcttactttacatttaaagagcacaagaaacttaagaaatcttcttcacaatttacagAGTGTGAAGAACAATCTTCCACGTATATGCACAAACCATCTTGATCCAACCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC