Sequence
atgc intronic sequence ATGC exonic sequencegttggattcaaccttctttttttatcttaaaaaaacatataactcaatatgtctcgcatagtaataaccaaaatttggttaatcctgattcctgcagTTGCATTCGCTGCACGGTAAAACAGTTGTGAGCATTTCAGCGGGTAAATACTGGGCATCTGCTGTTACTAGTACAGGTGAAGTTTACATGTGGGATGGGA
Basic information
species | Arabidopsis thaliana |
transcript | AT3G03790.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G03790.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA16G04300.1 (Glycine max), 3'ss of exon 6
------gttg-gattcaaccttctttttttatcttaaaaaaacatat---aactcaatatgtctcgcatagtaataa---ccaaaatttggttaatcctgattcctgcagTTGCATTCGCTGCACGGTAAAACAGTTGTGAGCATTTCAGCGGGTAAATACTGGGCATCTGCTGTTACTAGTACAGGTGAAGTTTACATGTGGGATGGGA
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gttcttattatgctctgaatttttctcttcacatgtattttatttttcccgagacaaaacatgttgattaaaaacacttcccccctttttgtttattttt-ttttaacagTTGTATGCTATGTGTGGAAGGAATATGGTGAGCATATCAGCTGGAAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATGTTTACATGTGGGATGGGA
upper sequence: AT3G03790.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA19G29100.1 (Glycine max), 3'ss of exon 6
---------gttggattcaaccttctttttttat-cttaaaaaaacatataactcaatatgtctcgcatagtaata---accaaaatttggtt--aatcctgattcctgcagTTGCATTCGCTGCACGGTAAAACAGTTGTGAGCATTTCAGCGGGTAAATACTGGGCATCTGCTGTTACTAGTACAGGTGAAGTTTACATGTGGGATGGGA
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gttcttattatcctctgaaattttctcttcacgtgttttttatttttcccgagacaaaacatgttgattaaaaatacttccccccgttttgttttaatttttttttgaacagTTATATGCTATGTGCGGAAGGAATATGGTGAGCATATCAGCTGGAAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATGTTTACATGTGGGATGGGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|301502472|gb|HO208012.1|HO208012EST: GTGCATTCTTTTATTGGGTTTCCTCTGACTCCAATCTTAGATGCCAACAG TTGCATTCGCTGCACGGTAAAACAGTTGTGAGCATTTCAGCGGGTAAATAC
genomic: GTGCATTCTTTTATTGGGTTTCCTCTGACTCCAATCTTAGATGCCAACAGgttggattca ... attcctgcagTTGCATTCGCTGCACGGTAAAACAGTTGTGAGCATTTCAGCGGGTAAATAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcaatatgtctcgcatagtaataaccaaaatttggttaatcctgattcctgcagTTGCATTCGCTGCACGGTAAAACAGTTGTGAGCATTTCAGCGGGTAAATACTGGGCATCTGCTGTTACTAGTACAGGTGAAGTTTACATGTGGGATGGGA
ttcctgc CT-rich tract
taataaccaaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggattcaaccttctttttttatcttaaaaaaacatataactcaatatgtctcgcatagtaataaccaaaatttggttaatcctgattcctgcagTTGCATTCGCTGCACGGTAAAACAGTTGTGAGCATTTCAGCGGGTAAATACTGGGCATCTGCTGTTACTAGTACAGGTGAAGTTTACATGTGGGATGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT