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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaggtttatttacgagctgtaagttaatttcgcaaaaccaacctttttaaaaaaattaactctgcagGTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAG

Basic information

species Arabidopsis thaliana
transcript AT3G02460.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G02460.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA19G05360.1 (Glycine max), 3'ss of exon 7
-------------------gtgagtgaggtttatttacgagctgtaagttaatttcgcaaaaccaacctttttaaaaaaattaactctgcagGTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAG
                   ||||     || | || |  | |   |||  ||||||      |  ||  |||        ||   |   ||| | ||  |||| || || ||||| ||||||||  ||||||  || || || |  ||||||||||||||||| ||| | ||| ||||||| |||||||||
gttagtatcatgtgaccttgtgacctgtgtctgtt-ataaacca-aagcaaatttct----gctcactgtttctgttttgtttgtttatcagATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAGGGTGCAATGAATCCGGATACATTGTTACCACTGGCTTATTCTATCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080576|gb|DR376333.1|DR376333
EST:     TCGTGTTCAAAGTGGGCTTAGCATTGCTCAAGTATTGCCAAGATGAGTTG                         GTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAA
genomic: TCGTGTTCAAAGTGGGCTTAGCATTGCTCAAGTATTGCCAAGATGAGTTGgtgagtgagg ... aactctgcagGTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgagctgtaagttaatttcgcaaaaccaacctttttaaaaaaattaactctgcagGTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAG
                                         aattaac  putative branch site (score: 2)
                           aacctttttaaaaaaa  TA-rich tract