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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactcttctgtgttctttagaatacgtataagtttttttgctatctttcgttgacttctctctggtacctgattaaagtccaatgggttttcttctgcagAGTGAACTCCATACTTGGCTGCCATCTGTTTCATGCATATATTATGTTGGTACAAAGGATCAACGTTCAAAATTGTTCTCTCAG

Basic information

species Arabidopsis thaliana
transcript AT2G46020.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46020.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA16G03950.1 (Glycine max), 3'ss of exon 7
---aactcttctgtgttctttagaatacgtataagtttttttgcta-tctttcgttgacttctctctggtacctgattaaagtccaatgggttttcttctgcagAGTGAACTCCATACTTGGCTGCCATCTGTTTCATGCATATATTATGTTGGTACAAAGGATCAACGTTCAAAATTGTTCTCTCAG
   ||||     | |  ||||  | |   |||   |||  | | || ||  |   |   |  | |   |    | | |  |    ||| |  ||  || ||||||||||  |  ||| |||| ||||||||||||||||||| | ||||||||| |  |||||||| || |||||||| || || || 
gttaactggaaggcgagctttcaatt---tattcatttgatggatactccctttctatgtgatattgtggttttaacttgaaaaaaattg--ttcattatgcagAGTGAGTTTTATAATTGGTTGCCATCTGTTTCATGCATTTTTTATGTTGGAAGCAAGGATCATCGATCAAAATTATTTTCCCAA

upper sequence: AT2G46020.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA07G07550.1 (Glycine max), 3'ss of exon 6
aactcttctgtgttctttagaatacgtataagtttttttgctatctttcgttgacttctctctggtacctgattaaagtccaatgggttttcttctgcagAGTGAACTCCATACTTGGCTGCCATCTGTTTCATGCATATATTATGTTGGTACAAAGGATCAACGTTCAAAATTGTTCTCTCAG
         |||  ||||  | |   |||   |||  | |  || || | ||  ||    | | ||   | |  | |    |||    ||  || ||||||||||  |  ||| |||| ||||||||||||||||||| | ||||||||| |  |||||||| || |||||||| || || || 
---------gtgagctttcaatt---tattcatttgatggacat-ttcctttctctgtgattttgtttttaacaagaaa--aattatgttcattatgcagAGTGAGTTTTATAATTGGTTGCCATCTGTTTCATGCATTTTTTATGTTGGAAGCAAGGATCACCGGTCAAAATTATTTTCCCAA

upper sequence: AT2G46020.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv15s0046g02290.t01 (Vitis vinifera), 3'ss of exon 7
aactcttctgtgttctttagaatacgtataagtttttttgc---tatctttc--gttgacttctctctggtacctgattaaagtccaatgggttttcttctgcagAGTGAACTCCATACTTGGCTGCCATCTGTTTCATGCATATATTATGTTGGTACAAAGGATCAACGTTCAAAATTGTTCTCTCAG
      |  ||| | |  |  |||  ||| | |       |    ||| | |  | |    | ||  |  |  ||  ||    |  ||  |  || | | | ||||||||| | || | ||||||||||||||| || || || ||||||||||||  |||||||||| | || ||||| || ||||| 
-----gttagtggtttgcatgatatttattactgcaacaacaaacatcctcctagcttgtctttccttcctttctctttcttatataaccgactt-catttccagAGTGAATTACACAATTGGCTGCCATCTGTGTCCTGTATTTATTATGTTGGTGGAAAGGATCAAAGATCGAAATTATTTTCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgttgacttctctctggtacctgattaaagtccaatgggttttcttctgcagAGTGAACTCCATACTTGGCTGCCATCTGTTTCATGCATATATTATGTTGGTACAAAGGATCAACGTTCAAAATTGTTCTCTCAG
                     acctgat  putative branch site (score: 4)
                                          ttttcttctgc  putative PPT
                        tgattaaa  TA-rich tract