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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtagaatcaaaatgtggattataacaatttcttaaatccattttttgagtcactgagtctaatcaaattgttatgacttagGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGACTTCAGTGAAATCCATTTCTTCGGTGACAAGACCTATGAG

Basic information

species Arabidopsis thaliana
transcript AT2G45790.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074350|gb|DR370107.1|DR370107
EST:     TTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGAT                         GTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC
genomic: TTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGATgtgagtagaa ... tatgacttagGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC
EST: gi|125079479|gb|EL141471.1|EL141471
EST:     TTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGAT                         GTCTTCC-TAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC
genomic: TTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGATgtgagtagaa ... tatgacttagGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC
EST: gi|164195032|gb|ES128728.1|ES128728
EST:     CCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGAT                         GTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC
genomic: CCTTACTTTCTCAATTGGGGGACAGATAAGCTTCGATgtgagtagaa ... tatgacttagGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcttaaatccattttttgagtcactgagtctaatcaaattgttatgacttagGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGACTTCAGTGAAATCCATTTCTTCGGTGACAAGACCTATGAG
                              gtctaat  putative branch site (score: 3)
     ttaaatccatttttt  TA-rich tract