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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttagtttctgtatctgtcatgctttgcttcatttgtattccatctttatttacgtttcaggatgactttaatatttgcagGCATATCTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTG

Basic information

species Arabidopsis thaliana
transcript AT2G44280.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116399887|gb|EG442479.1|EG442479
EST:     AAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAG                         GCATATCTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCT
genomic: AAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAGgttagttagt ... atatttgcagGCATATCTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCT
EST: gi|116400316|gb|EG442908.1|EG442908
EST:     AAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAG                         GCATATCTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCCATCTGCT
genomic: AAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAGgttagttagt ... atatttgcagGCATATCTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCT
EST: gi|116406007|gb|EG448599.1|EG448599
EST:     AAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAG                         GCATATCTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCT
genomic: AAGTTGCTATGGTTTATCTCCTCACTCGACTAGTATTGAATGTTTCACAGgttagttagt ... atatttgcagGCATATCTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttcatttgtattccatctttatttacgtttcaggatgactttaatatttgcagGCATATCTTGCATTCTTTGTTATTGATGATTTGCAAATGGCTCAATCTGCTAAAGCTCTG
                                        ctttaat  putative branch site (score: 4)
                                    atgactttaatattt  TA-rich tract