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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttacattctttctctcgtagttaagagttttttttgtatagactgcttcttgaatttttggtttaacactccgagaaatgtgcagGAGGAATTGTTGCCTGGTGGACACGGTCTTATGGTTAGAGGGTATCGTCCTGTCATCAATACTCTGGCGAAAGGTCTTGATATCCGAGTAGGCCACAG

Basic information

species Arabidopsis thaliana
transcript AT2G43020.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43020.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os04g53190.1 (Oryza sativa), 3'ss of exon 8
--------------------gttagttaca-ttctttctctcgtagttaagagttttttttgtatagactgcttcttgaatttttggtttaacactccgagaaatgtgcagGAGGAATTGTTGCCTGGTGGACACGGTCTTATGGTTAGAGGGTATCGTCCTGTCATCAATACTCTGGCGAAAGGTCTTGATATCCGAGTAGGCCACAG
                     | || |||| ||     | |  |  | | ||  |  |  ||  |||  || ||  |   | |   |||    |||  |      |||||||||| | || | |||||||| || ||||| |||||| | || |||||||| || || ||||||||||| ||||| || ||||| ||  | ||||||||
gtaggactttggttcctgatatcagctacaattgccaatattttgctcatgatgtactcatgc-tagtttgattgctatgtctcatgttcg-tactgtgctgtgggtgcagGAGGTACTGCTTCCTGGTGGCCATGGTCTCATGGTTCGTGGATATCGTCCAGTAATAAATACTCTGGCAAAAGGCCTAGATATACGCCTTGGCCACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgtatagactgcttcttgaatttttggtttaacactccgagaaatgtgcagGAGGAATTGTTGCCTGGTGGACACGGTCTTATGGTTAGAGGGTATCGTCCTGTCATCAATACTCTGGCGAAAGGTCTTGATATCCGAGTAGGCCACAG
                              gtttaac  putative branch site (score: 3)
                      aatttttggtttaa  TA-rich tract