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gtaatcaaatacaaataatttaactattgatgataagtccatatctattcttttttagcaaattaattgtgtttttttctttctatgttgtgatcatgtagTCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTTGTGTTTAGAATGTATGGAAACCGCGATAACCGATACTGGAGAATGTCAACCGCTTT
species | Arabidopsis thaliana |
transcript | AT2G39830.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCACGAATATGATAAAACTGCTCGTTGTTGTAGCTGCGAACGTTTGGAG TCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTTGTGTTTAEST: gi|116398790|gb|EG441382.1|EG441382
genomic: CTCACGAATATGATAAAACTGCTCGTTGTTGTAGCTGCGAACGTTTGGAGgtaatcaaat ... gatcatgtagTCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTTGTGTTTA
EST: CTCACGAATATGATAAAACTGCTCGTTGTTGTAGCTGCGAACGTTTGGGG TCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAAAGTT-GTGTTEST: gi|116398781|gb|EG441373.1|EG441373
genomic: CTCACGAATATGATAAAACTGCTCGTTGTTGTAGCTGCGAACGTTTGGAGgtaatcaaat ... gatcatgtagTCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAA--GTTTGTGTT
EST: CTCACGAATATGATAAAACTGCTCGTTGTTGTAGCTGCGAACGTTTGGAG TCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTTGTGTTTAEST: gi|116398778|gb|EG441370.1|EG441370
genomic: CTCACGAATATGATAAAACTGCTCGTTGTTGTAGCTGCGAACGTTTGGAGgtaatcaaat ... gatcatgtagTCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTTGTGTTTA
EST: CTCACGAATATGATAAAACTGCTCGTTGTTGTAGCTGCGAACGTTTGGAG TCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTTGTGTTTA
genomic: CTCACGAATATGATAAAACTGCTCGTTGTTGTAGCTGCGAACGTTTGGAGgtaatcaaat ... gatcatgtagTCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTTGTGTTTA
attcttttttagcaaattaattgtgtttttttctttctatgttgtgatcatgtagTCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTTGTGTTTAGAATGTATGGAAACCGCGATAACCGATACTGGAGAATGTCAACCGCTTT
aattaat putative branch site (score: 3)
tttttagcaaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcaaatacaaataatttaactattgatgataagtccatatctattcttttttagcaaattaattgtgtttttttctttctatgttgtgatcatgtagTCATGGGATGTGAGATATTACACGTTAGAGGATGGGAGAAGTTTGTGTTTAGAATGTATGGAAACCGCGATAACCGATACTGGAGAATGTCAACCGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA