1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtgcattccatcttatttcattccaataaatataatcaaataccacaagaagctaatcaacatcttcatgaaagaagGACTCGCTTGACGAGAAAGAAACGCTCCTTCGTCACACTTACGGTTTAGGATATTCAGAGCCCAATGTGACATTTGCACTTTGCCGTGGAAGTTGGTCTT
species | Arabidopsis thaliana |
transcript | AT2G39690.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT GACTCGCTTGACGAGAAAGAAACGCTCCTTCGTCACACTTACGGTTTAGGAEST: gi|116384466|gb|EG427058.1|EG427058
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaagGACTCGCTTGACGAGAAAGAAACGCTCCTTCGTCACACTTACGGTTTAGGA
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116384466|gb|EG427058.1|EG427058
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116384466|gb|EG427058.1|EG427058
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116383984|gb|EG426576.1|EG426576
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT GACTCGCTTGACGAGAAAGAAACGCTCCTTCGTCACACTTACGGTTTAGGAEST: gi|116384467|gb|EG427059.1|EG427059
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaagGACTCGCTTGACGAGAAAGAAACGCTCCTTCGTCACACTTACGGTTTAGGA
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116384467|gb|EG427059.1|EG427059
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116384467|gb|EG427059.1|EG427059
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116384469|gb|EG427061.1|EG427061
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116384469|gb|EG427061.1|EG427061
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116384469|gb|EG427061.1|EG427061
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116384469|gb|EG427061.1|EG427061
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116384465|gb|EG427057.1|EG427057
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116384465|gb|EG427057.1|EG427057
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT AEST: gi|116384465|gb|EG427057.1|EG427057
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
EST: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGAT A
genomic: CTTTGGCGATTGAACATTTCGTCTTGCGGCATCCTTGTGAACCAGAAGATgtaagtgcat ... atgaaagaag-
ccaataaatataatcaaataccacaagaagctaatcaacatcttcatgaaagaagGACTCGCTTGACGAGAAAGAAACGCTCCTTCGTCACACTTACGGTTTAGGATATTCAGAGCCCAATGTGACATTTGCACTTTGCCGTGGAAGTTGGTCTT
agctaat putative branch site (score: 3)
tcttcat putative PPT
aaatataatcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcattccatcttatttcattccaataaatataatcaaataccacaagaagctaatcaacatcttcatgaaagaagGACTCGCTTGACGAGAAAGAAACGCTCCTTCGTCACACTTACGGTTTAGGATATTCAGAGCCCAATGTGACATTTGCACTTTGCCGTGGAAGTTGGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG