Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcgattttattccttaaaattatcgcttttaatcgatcccgagatctattatataatgacacaatgcaagaacttatatcaatccaaataatttctagGACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTCGTTGTCCCCTTGACCATCATCGTGGCGTGGATTTTGGGAATTAATATGG

Basic information

species Arabidopsis thaliana
transcript AT2G38170.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124856766|gb|EH941203.1|EH941203
EST:     CCGTTATTTTTGCCTTTAAGAACAAGCTT                         GACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATT
genomic: CCGTTATTTTTGCCTTTAAGAACAAGCTTgtaagttcga ... taatttctagGACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATT
EST: gi|125103938|gb|EL158161.1|EL158161
EST:     TTTTTGTCCTTTAAGAACAAGCTT                         GACGTATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTC
genomic: TTTTTG-CCTTTAAGAACAAGCTTgtaagttcga ... taatttctagGACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTC
EST: gi|125223017|gb|EL237102.1|EL237102
EST:     ATTTTCGCCTTTAAGAACAAGCTT                         GACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTC
genomic: ATTTTTGCCTTTAAGAACAAGCTTgtaagttcga ... taatttctagGACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctattatataatgacacaatgcaagaacttatatcaatccaaataatttctagGACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTCGTTGTCCCCTTGACCATCATCGTGGCGTGGATTTTGGGAATTAATATGG
                                                tttct  CT-rich tract
                              ttatatcaatccaaat  TA-rich tract