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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagttctttcatctttctttttttttctcgatgaatcaaacgacaatttcggtttggtttcttgtcattattgatcttccctcctcttcaccatcttgttttcctcgaccccatcatgttgattatagatcgtcaaataatggattttaccaatccctataaatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTATAAGACCATTGAGGAATTGTGGGACGGTGAAATTTGAGATAATGTCCCTC

Basic information

species Arabidopsis thaliana
transcript AT2G37760.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075291|gb|DR371048.1|DR371048
EST:     ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAG                         GAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
genomic: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctt ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: gi|86075489|gb|DR371246.1|DR371246
EST:     ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAG                         GAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
genomic: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctt ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: gi|116412485|gb|EG455077.1|EG455077
EST:     ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAG                         GAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
genomic: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctt ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: gi|116448013|gb|EG490605.1|EG490605
EST:     ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCTAG                         GAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
genomic: ACTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctt ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTAT
EST: gi|124764743|gb|EH854873.1|EH854873
EST:     CTTGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAG                         GAGAAGTTTTGCCGAGCTACTGAGTTTGCGCA
genomic: C-TGGTCCATACCGGAAGATCTGTTTACCAAGTTCTCTAACATTCCCCAGgcaagttctt ... aatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgattatagatcgtcaaataatggattttaccaatccctataaatcttgcagGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACACGGCTTCTATAAGACCATTGAGGAATTGTGGGACGGTGAAATTTGAGATAATGTCCCTC
 tgttgat  putative branch site (score: 4)
                  aaataatggatttta  TA-rich tract