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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaagagtatatgaatcattcattccttctggttagagatcgatgagattactttccgtttttcttaacaactattgtcacggaccttgtgcagGCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG

Basic information

species Arabidopsis thaliana
transcript AT2G37240.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86082869|gb|DR378628.1|DR378628
EST:     CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTG                         GCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
genomic: CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGgtaagtttaa ... ccttgtgcagGCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
EST: gi|116467378|gb|EG509970.1|EG509970
EST:     CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTG                         GCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
genomic: CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGgtaagtttaa ... ccttgtgcagGCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
EST: gi|116467371|gb|EG509963.1|EG509963
EST:     CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTG                         GCAACAAGGCGGAATTTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
genomic: CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGgtaagtttaa ... ccttgtgcagGCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
EST: gi|125186352|gb|EL201306.1|EL201306
EST:     AAAGAGGCGGCTG                         GCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
genomic: AAAGAGGCGGCTGgtaagtttaa ... ccttgtgcagGCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
EST: gi|125251334|gb|EL265419.1|EL265419
EST:     CAAGACTGGAAACTCTCGTTTATGAA-GATACAGTTGAAAGAGGCGGCTG                         GCAACAAGGCGGAATCTTAG
genomic: CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGgtaagtttaa ... ccttgtgcagGCAACAAGGCGGAATCTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgatgagattactttccgtttttcttaacaactattgtcacggaccttgtgcagGCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAG
                       tcttaac  putative branch site (score: 2)
                   tttttcttaa  TA-rich tract