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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaagaatctgtgatcaatcaaacatgcttagaaattgcagttttgattctcaagagtttgttgttactggtttcagGAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATTTATTCACATATAAGAAAGGCGTTGTTCGGGTGGAGACTCAAGGGATATG

Basic information

species Arabidopsis thaliana
transcript AT2G36310.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125039468|gb|EL111737.1|EL111737
EST:     TATGTGC-AATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACG                         GAGTGTACCTCCATGACCCAG
genomic: TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACGgtaagcaaga ... ctggtttcagGAGTGTACCTCCATGACCCAG
EST: gi|116442245|gb|EG484837.1|EG484837
EST:     AATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACG                         GAGTGTACCTCCATGCCCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATT
genomic: TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACGgtaagcaaga ... ctggtttcagGAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATT
EST: gi|164001319|gb|ES078835.1|ES078835
EST:     TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACG                         GAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCC
genomic: TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACGgtaagcaaga ... ctggtttcagGAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCC
EST: gi|86074635|gb|DR370392.1|DR370392
EST:     TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACG                         GAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATT
genomic: TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACGgtaagcaaga ... ctggtttcagGAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatgcttagaaattgcagttttgattctcaagagtttgttgttactggtttcagGAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATTTATTCACATATAAGAAAGGCGTTGTTCGGGTGGAGACTCAAGGGATATG
                   ttttgat  putative branch site (score: 4)
      ttagaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcaagaatctgtgatcaatcaaacatgcttagaaattgcagttttgattctcaagagtttgttgttactggtttcagGAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATTTATTCACATATAAGAAAGGCGTTGTTCGGGTGGAGACTCAAGGGATATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA