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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctagttgtaaatccagtgacttgtttatgatctgatattcgtgacttatctcttttcaacttattgccagGGTTTCACATTTCCTGTGGCAGAGTTATTCCTAGAAGATGTATTGGAGAAAAGTCGTTATAATATTAAGTCGTCTGACTCGGGGAATTATCAAGGTAGTT

Basic information

species Arabidopsis thaliana
transcript AT2G35920.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35920.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 7
------------------------gtatgtctagttgtaaatccagtgacttgtttatgatctg-----atattcgtgacttatctcttttcaacttattgccagGGTTTCACATTTCCTGTGGCAGAGTTATTCCTAGAAGATGTATTGGAGAAAAGTCGTTATAATATTAAGTCGTCTGACTCGGGGAATTATCAAGGTAGTT---
                           ||    |   |   |   |  |||| || |  |  |       ||||  ||   |||     |||||  |  || ||||| || || || || ||||||||||| || || |||||| |||||||||||| |||||||||||| |||||    || |  |  || | ||| || |      
gtattgtggatctttttagtcttgagctgctgggacatgtgttttg-aacttattcaacacatatttgtgtatttatgcaatattatccttcaatatgctggcagGGATTTACTTTCCCCGTGGCAGAGTTGTTTCTGGAAGATCTATTGGAGAAAACTCGTTATAATATCAAGTCA---GAGTTTGACAACTTTCACGGAAACCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgacttgtttatgatctgatattcgtgacttatctcttttcaacttattgccagGGTTTCACATTTCCTGTGGCAGAGTTATTCCTAGAAGATGTATTGGAGAAAAGTCGTTATAATATTAAGTCGTCTGACTCGGGGAATTATCAAGGTAGTT
              atctgat  putative branch site (score: 4)
                                 tctcttttcaactt  putative PPT
     ttgtttat  TA-rich tract