1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacttgttctcttcttggtctgatcatatttgttttgagaaagaatatgaaagataaactaatagaatagcttagagaacaaggaaatataaaccggtttgttctgttactcatgaaatcctctttgtcatttgctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAG
species | Arabidopsis thaliana |
transcript | AT2G35260.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCEST: gi|116414687|gb|EG457279.1|EG457279
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTC
EST: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGEST: gi|116414696|gb|EG457288.1|EG457288
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
EST: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGEST: gi|164157425|gb|ES141031.1|ES141031
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
EST: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG CTTGGTATGAGAAGAGACAGATGAAGTAAGAEST: gi|124966240|gb|EL040357.1|EL040357
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAG-AAGA
EST: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTEST: gi|125049590|gb|EL121859.1|EL121859
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACT
EST: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG CTTGGTATGAGAAGAGAEST: gi|116414695|gb|EG457287.1|EG457287
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGA
EST: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGEST: gi|124915962|gb|EH989836.1|EH989836
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
EST: TGATTTTAAGAAGCTTTTGTCAG CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
genomic: TGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
taaaccggtttgttctgttactcatgaaatcctctttgtcatttgctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAG
tttgcttt CT-rich tract
atgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgttctcttcttggtctgatcatatttgttttgagaaagaatatgaaagataaactaatagaatagcttagagaacaaggaaatataaaccggtttgttctgttactcatgaaatcctctttgtcatttgctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAGGACTCTTAGCCCTCTATCTCGGTATTGAATGGGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG