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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctcataaatctccttatttcttctttatatcatcattacttgttatctgcagctccttcttgtccctttcacttactctctgtccttcttttatcagGTTGCCACTGACAAATGTATTATGGCATTTCTTTTCCTTATCGTCATTGGTGTCATAGCAATCATCATCGTCAAG

Basic information

species Arabidopsis thaliana
transcript AT2G35190.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35190.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA17G15990.1 (Glycine max), 3'ss of exon 8
gttagtctcataaatctccttatttcttctttatatcatcattacttgttatctgcagctccttcttgtccctttcacttactctctgtccttcttttatcagGTTGCCACTGACAAATGTATTATGGCATTTCTTTTCCTTATCGTCATTGGTGTCATAGCAATCATCATCGTCAAG
|||  | ||   |   |||  ||   | | ||  |  ||  |||||    || || |        | || | | | |||||     |||  || | | || ||||||| |||||||| |||||||||||| ||||||||||||| |||||||| || || |||||||| || || |||
gttgatttctacagaatccacatcattccattgcaatatagttact----atgtgaa--------tcgttcatctaacttaaa---tgtgtttttgtaat-agGTTGCTACTGACAAGTGTATTATGGCACTTCTTTTCCTTATTGTCATTGGAGTAATTGCAATCATTATTGTAAAG

upper sequence: AT2G35190.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA05G05720.1 (Glycine max), 3'ss of exon 5
gttagtctcataaatctccttatttcttctttatatcatcattacttgttatctgcagctccttcttgtccctttcacttactctctgtccttcttttatcagGTTGCCACTGACAAATGTATTATGGCATTTCTTTTCCTTATCGTCATTGGTGTCATAGCAATCATCATCGTCAAG
||   | ||   |   |||  ||   | | ||  |  ||  ||| | ||| |   |   || |              || |||    |   || || ||  ||||||| |||||||| ||||| |||||  |||||||||||||||||||||| || || |||||||| || || |||
gtcgatttctacagaatccacatcattccattgcaatatagttaatagttgtgaaccattcat--------------ctaacttaaaggtgtttttgtaatagGTTGCTACTGACAAGTGTATAATGGCGCTTCTTTTCCTTATCGTCATTGGAGTAATTGCAATCATTATTGTAAAG

upper sequence: AT2G35190.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA05G05720.2 (Glycine max), 3'ss of exon 5
gttagtctcataaatctccttatttcttctttatat-catcattac-ttgttatct-gcagctccttcttgtccctttcacttactctctgtccttcttttatcagGTTGCCACTGACAAATGTATTATGGCATTTCTTTTCCTTATCGTCATTGGTGTCATAGCAATCATCATCGTCAAG
          ||         |||||| |   ||   ||||||| | |||  || | |    |  || |   || ||   || |||    |   || || ||  ||||||| |||||||| ||||| |||||  |||||||||||||||||||||| || || |||||||| || || |||
---------gtaggcaggtcgatttctacagaatccacatcattccattgcaatatagttaatagttgtgaaccattcatctaacttaaaggtgtttttgtaatagGTTGCTACTGACAAGTGTATAATGGCGCTTCTTTTCCTTATCGTCATTGGAGTAATTGCAATCATTATTGTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatctgcagctccttcttgtccctttcacttactctctgtccttcttttatcagGTTGCCACTGACAAATGTATTATGGCATTTCTTTTCCTTATCGTCATTGGTGTCATAGCAATCATCATCGTCAAG
                           cacttac  putative branch site (score: 2)
          ctccttcttgtccctt  CT-rich tract
                                           ttcttttat  TA-rich tract