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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaaaataagaacttttattttgttacaatttatatcaagccttaaaatgagtattattttcttgtaatgttttagGACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAG

Basic information

species Arabidopsis thaliana
transcript AT2G30290.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30290.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA09G41070.3 (Glycine max), 3'ss of exon 6
-------------------------------------gtactaaaataagaacttttatttt-gttacaattta---tatcaagccttaaa---atgagtattattttcttgtaatgttttagGACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAG
                                     ||   ||| |      ||| | ||  | |   || |      ||  |  ||||    ||   |||| | |  || |||   | |||||||||||| |||||||||||||| |||| || |||||||||  ||| |||||| | || || || ||||| || |||||||
gtattttggttaactgaaccttgtcaggcacattattgtga-aaagtgtatgttttcacttcagatgggatctggttcttccggttttaaccgtatacatattttatatttctaac--tatagGACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAG

upper sequence: AT2G30290.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA18G44580.1 (Glycine max), 3'ss of exon 6
-----------------------------gtactaaaataagaacttt----tattttgt-tacaatttatatcaa---------gccttaaa---atgagtattattttcttgtaatgttttagGACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAG
                               | ||   | | || |||    | |||| | | ||  |   ||||          |  ||||     |   ||| ||||| || |    |   ||||||||||| |||||||||||||| |||| || |||||||||  ||| || ||| | || || || ||||| || |||||| 
ggtatttggttaactgaaccttgtcaggcacattattgtgaaaagtttattatgttttctcttcagatgggatcagcttcttctggttttaaccatctacatatgatttttttttctaataacaGGACACTTTCCGAGGAAGAGTATGTGAATGCCCAATTGTTCAAAATGTGAAATTTGTTGGAGATGGATATACCCACTGTGAA-

upper sequence: AT2G30290.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA07G14800.1 (Glycine max), 3'ss of exon 6
----------------------------gtactaaaataagaacttttattttgttacaatttatatcaagccttaaaatgagtattattttcttgtaatgttttagGACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAG
                             || |    | | ||  ||||| ||  || |||  ||       |      |     ||| ||  ||      || ||||||||||||||||||||||||||| |||| || ||| | |||  |||  ||||| | || || || || || || |||||||
gtatttagttaactcaatcgtgtcagccatatttttgtga-aatgtttatattactataatacatgcgggatcaggctcttctggttaattgttttcccaattatagGACACTTTCAGAGGAAGAGTATGTGAATGCCCTATTATACAAAATGTGCAGTTTGTTGGGGATGGATACACCCACTGTGAAG

upper sequence: AT2G30290.2 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA03G00510.1 (Glycine max), 3'ss of exon 6
---------------------gtactaaaataagaacttttattttgttacaatttatatcaagcc---ttaaaatgagtattattttcttgtaatgttttagGACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAG
                      || |    | | ||  ||||  ||  || |||  || |   | |    |   |||  |   ||| | ||   |  |  ||||||||||||||||||||||||||| |||| || ||| | |||  |||  ||||| | ||||| || || || || |||||||
gtatttggttaattgtcagccatatttttgtga-aatgtttacattactataatacatgtggggtcaggctcttatggtttcaattgttttccta-atcatagGACACTTTCAGAGGAAGAGTATGTGAATGCCCTATTATACAAAATGTGCAGTTTGTTGGTGATGGATACACCCACTGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttacaatttatatcaagccttaaaatgagtattattttcttgtaatgttttagGACACTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACGGTTATACACATTGTGAAG
                     ttaaaatgagtattat  TA-rich tract