1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacgataaatactgtaaaactgcatgctatcaatgaggaaaatacttaataagcataatttggatttgttttgtgggggtgaatacagAGAGAAGGAAAGCTCCTGCCAAGAAAAACAATCACAGAGCCATGGATGATATAAGAGAAAGTATAAAGGAGCTTAAGTACTACAAGAAAACAATATTCAA
species | Arabidopsis thaliana |
transcript | AT2G26970.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATGGTTCCCCATAG AGAGAAGGAAAGCTCCTGCCAAG-AAAACAATCACAGAGCCATGGATGATAEST: gi|124953321|gb|EL028523.1|EL028523
genomic: GATGGTTCCCCATAGgtaacgataa ... gtgaatacagAGAGAAGGAAAGCTCCTGCCAAGAAAAACAATCACAGAGCCATGGATGATA
EST: CGTCGATGTCAGTAGCGTCAAGGCTTTATGCGCCCGATGGTTCCCCATAG AGAGAAGGAAAGCTCCTGCCAAGEST: gi|164171008|gb|ES122012.1|ES122012
genomic: CGTCGATGTCAGTAGCGTCAAGGCTTTATGCGCCCGATGGTTCCCCATAGgtaacgataa ... gtgaatacagAGAGAAGGAAAGCTCCTGCCAAG
EST: GATGGTTCCCCATAG AGAGAAGGAAAGCTCCTGCCAAGAAAAACAATCACAGAGCCATGGATGATA
genomic: GATGGTTCCCCATAGgtaacgataa ... gtgaatacagAGAGAAGGAAAGCTCCTGCCAAGAAAAACAATCACAGAGCCATGGATGATA
tgaggaaaatacttaataagcataatttggatttgttttgtgggggtgaatacagAGAGAAGGAAAGCTCCTGCCAAGAAAAACAATCACAGAGCCATGGATGATATAAGAGAAAGTATAAAGGAGCTTAAGTACTACAAGAAAACAATATTCAA
acttaat putative branch site (score: 4)
aaaatacttaataagc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgataaatactgtaaaactgcatgctatcaatgaggaaaatacttaataagcataatttggatttgttttgtgggggtgaatacagAGAGAAGGAAAGCTCCTGCCAAGAAAAACAATCACAGAGCCATGGATGATATAAGAGAAAGTATAAAGGAGCTTAAGTACTACAAGAAAACAATATTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA